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A Snapshot of the Emerging Tomato Genome Sequence
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Zeitschriftentitel: | The Plant Genome |
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Personen und Körperschaften: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
In: | The Plant Genome, 2, 2009, 1 |
Format: | E-Article |
Sprache: | Englisch |
veröffentlicht: |
Wiley
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Schlagwörter: |
author_facet |
Mueller, Lukas A. Lankhorst, René Klein Tanksley, Steven D. Giovannoni, James J. White, Ruth Vrebalov, Julia Fei, Zhangjun van Eck, Joyce Buels, Robert Mills, Adri A. Menda, Naama Tecle, Isaak Y. Bombarely, Aureliano Stack, Stephen Royer, Suzanne M. Chang, Song‐Bin Shearer, Lindsay A. Kim, Byung Dong Jo, Sung‐Hwan Hur, Cheol‐Goo Choi, Doil Li, Chang‐Bao Zhao, Jiuhai Jiang, Hongling Geng, Yu Dai, Yuanyuan Fan, Huajie Chen, Jinfeng Lu, Fei Shi, Jinfeng Sun, Shouhong Chen, Jianjun Yang, Xiaohua Lu, Chen Chen, Mingsheng Cheng, Zhukuan Li, Chuanyou Ling, Hongqing Xue, Yongbiao Wang, Ying Seymour, Graham B. Bishop, Gerard J. Bryan, Glenn Rogers, Jane Sims, Sarah Butcher, Sarah Buchan, Daniel Abbott, James Beasley, Helen Nicholson, Christine Riddle, Clare Humphray, Sean McLaren, Karen Mathur, Saloni Vyas, Shailendra Solanke, Amolkumar U. Kumar, Rahul Gupta, Vikrant Sharma, Arun K. Khurana, Paramjit Khurana, Jitendra P. Tyagi, Akhilesh Sarita Chowdhury, Parul Shridhar, Smriti Chattopadhyay, Debasis Pandit, Awadhesh Singh, Pradeep Kumar, Ajay Dixit, Rekha Singh, Archana Praveen, Sumera Dalal, Vivek Yadav, Mahavir Ghazi, Irfan Ahmad Gaikwad, Kishor Sharma, Tilak Raj Mohapatra, Trilochan Singh, Nagendra Kumar Szinay, Dóra de Jong, Hans Peters, Sander van Staveren, Marjo Datema, Erwin Fiers, Mark W.E.J. van Ham, Roeland C.H.J. Lindhout, P. Philippot, Murielle Frasse, Pierre Regad, Farid Zouine, Mohamed Bouzayen, Mondher Asamizu, Erika Sato, Shusei Fukuoka, Hiroyuki Tabata, Satoshi Shibata, Daisuke Botella, Miguel A. Perez‐Alonso, M. Fernandez‐Pedrosa, V. Osorio, Sonia Mico, Amparo Granell, Antonio Zhang, Zhonghua He, Jun Huang, Sanwen Du, Yongchen Qu, Dongyu Liu,, Longfei Liu, Dongyuan Wang, Jun Ye, Zhibiao Yang, Wencai Wang, Guoping Vezzi, Alessandro Todesco, Sara Valle, Giorgio Falcone, Giulia Pietrella, Marco Giuliano, Giovanni Grandillo, Silvana Traini, Alessandra D'Agostino, Nunzio Chiusano, Maria Luisa Ercolano, Mara Barone, Amalia Frusciante, Luigi Schoof, Heiko Jöcker, Anika Bruggmann, Rémy Spannagl, Manuel Mayer, Klaus X.F. Guigó, Roderic Camara, Francisco Rombauts, Stephane Fawcett, Jeffrey A. Van de Peer, Yves Knapp, Sandra Zamir, Dani Stiekema, Willem Mueller, Lukas A. Lankhorst, René Klein Tanksley, Steven D. Giovannoni, James J. White, Ruth Vrebalov, Julia Fei, Zhangjun van Eck, Joyce Buels, Robert Mills, Adri A. Menda, Naama Tecle, Isaak Y. Bombarely, Aureliano Stack, Stephen Royer, Suzanne M. Chang, Song‐Bin Shearer, Lindsay A. Kim, Byung Dong Jo, Sung‐Hwan Hur, Cheol‐Goo Choi, Doil Li, Chang‐Bao Zhao, Jiuhai Jiang, Hongling Geng, Yu Dai, Yuanyuan Fan, Huajie Chen, Jinfeng Lu, Fei Shi, Jinfeng Sun, Shouhong Chen, Jianjun Yang, Xiaohua Lu, Chen Chen, Mingsheng Cheng, Zhukuan Li, Chuanyou Ling, Hongqing Xue, Yongbiao Wang, Ying Seymour, Graham B. Bishop, Gerard J. Bryan, Glenn Rogers, Jane Sims, Sarah Butcher, Sarah Buchan, Daniel Abbott, James Beasley, Helen Nicholson, Christine Riddle, Clare Humphray, Sean McLaren, Karen Mathur, Saloni Vyas, Shailendra Solanke, Amolkumar U. Kumar, Rahul Gupta, Vikrant Sharma, Arun K. Khurana, Paramjit Khurana, Jitendra P. Tyagi, Akhilesh Sarita Chowdhury, Parul Shridhar, Smriti Chattopadhyay, Debasis Pandit, Awadhesh Singh, Pradeep Kumar, Ajay Dixit, Rekha Singh, Archana Praveen, Sumera Dalal, Vivek Yadav, Mahavir Ghazi, Irfan Ahmad Gaikwad, Kishor Sharma, Tilak Raj Mohapatra, Trilochan Singh, Nagendra Kumar Szinay, Dóra de Jong, Hans Peters, Sander van Staveren, Marjo Datema, Erwin Fiers, Mark W.E.J. van Ham, Roeland C.H.J. Lindhout, P. Philippot, Murielle Frasse, Pierre Regad, Farid Zouine, Mohamed Bouzayen, Mondher Asamizu, Erika Sato, Shusei Fukuoka, Hiroyuki Tabata, Satoshi Shibata, Daisuke Botella, Miguel A. Perez‐Alonso, M. Fernandez‐Pedrosa, V. Osorio, Sonia Mico, Amparo Granell, Antonio Zhang, Zhonghua He, Jun Huang, Sanwen Du, Yongchen Qu, Dongyu Liu,, Longfei Liu, Dongyuan Wang, Jun Ye, Zhibiao Yang, Wencai Wang, Guoping Vezzi, Alessandro Todesco, Sara Valle, Giorgio Falcone, Giulia Pietrella, Marco Giuliano, Giovanni Grandillo, Silvana Traini, Alessandra D'Agostino, Nunzio Chiusano, Maria Luisa Ercolano, Mara Barone, Amalia Frusciante, Luigi Schoof, Heiko Jöcker, Anika Bruggmann, Rémy Spannagl, Manuel Mayer, Klaus X.F. Guigó, Roderic Camara, Francisco Rombauts, Stephane Fawcett, Jeffrey A. Van de Peer, Yves Knapp, Sandra Zamir, Dani Stiekema, Willem |
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author |
Mueller, Lukas A. Lankhorst, René Klein Tanksley, Steven D. Giovannoni, James J. White, Ruth Vrebalov, Julia Fei, Zhangjun van Eck, Joyce Buels, Robert Mills, Adri A. Menda, Naama Tecle, Isaak Y. Bombarely, Aureliano Stack, Stephen Royer, Suzanne M. Chang, Song‐Bin Shearer, Lindsay A. Kim, Byung Dong Jo, Sung‐Hwan Hur, Cheol‐Goo Choi, Doil Li, Chang‐Bao Zhao, Jiuhai Jiang, Hongling Geng, Yu Dai, Yuanyuan Fan, Huajie Chen, Jinfeng Lu, Fei Shi, Jinfeng Sun, Shouhong Chen, Jianjun Yang, Xiaohua Lu, Chen Chen, Mingsheng Cheng, Zhukuan Li, Chuanyou Ling, Hongqing Xue, Yongbiao Wang, Ying Seymour, Graham B. Bishop, Gerard J. Bryan, Glenn Rogers, Jane Sims, Sarah Butcher, Sarah Buchan, Daniel Abbott, James Beasley, Helen Nicholson, Christine Riddle, Clare Humphray, Sean McLaren, Karen Mathur, Saloni Vyas, Shailendra Solanke, Amolkumar U. Kumar, Rahul Gupta, Vikrant Sharma, Arun K. Khurana, Paramjit Khurana, Jitendra P. Tyagi, Akhilesh Sarita Chowdhury, Parul Shridhar, Smriti Chattopadhyay, Debasis Pandit, Awadhesh Singh, Pradeep Kumar, Ajay Dixit, Rekha Singh, Archana Praveen, Sumera Dalal, Vivek Yadav, Mahavir Ghazi, Irfan Ahmad Gaikwad, Kishor Sharma, Tilak Raj Mohapatra, Trilochan Singh, Nagendra Kumar Szinay, Dóra de Jong, Hans Peters, Sander van Staveren, Marjo Datema, Erwin Fiers, Mark W.E.J. van Ham, Roeland C.H.J. Lindhout, P. Philippot, Murielle Frasse, Pierre Regad, Farid Zouine, Mohamed Bouzayen, Mondher Asamizu, Erika Sato, Shusei Fukuoka, Hiroyuki Tabata, Satoshi Shibata, Daisuke Botella, Miguel A. Perez‐Alonso, M. Fernandez‐Pedrosa, V. Osorio, Sonia Mico, Amparo Granell, Antonio Zhang, Zhonghua He, Jun Huang, Sanwen Du, Yongchen Qu, Dongyu Liu,, Longfei Liu, Dongyuan Wang, Jun Ye, Zhibiao Yang, Wencai Wang, Guoping Vezzi, Alessandro Todesco, Sara Valle, Giorgio Falcone, Giulia Pietrella, Marco Giuliano, Giovanni Grandillo, Silvana Traini, Alessandra D'Agostino, Nunzio Chiusano, Maria Luisa Ercolano, Mara Barone, Amalia Frusciante, Luigi Schoof, Heiko Jöcker, Anika Bruggmann, Rémy Spannagl, Manuel Mayer, Klaus X.F. Guigó, Roderic Camara, Francisco Rombauts, Stephane Fawcett, Jeffrey A. Van de Peer, Yves Knapp, Sandra Zamir, Dani Stiekema, Willem |
spellingShingle |
Mueller, Lukas A. Lankhorst, René Klein Tanksley, Steven D. Giovannoni, James J. White, Ruth Vrebalov, Julia Fei, Zhangjun van Eck, Joyce Buels, Robert Mills, Adri A. Menda, Naama Tecle, Isaak Y. Bombarely, Aureliano Stack, Stephen Royer, Suzanne M. Chang, Song‐Bin Shearer, Lindsay A. Kim, Byung Dong Jo, Sung‐Hwan Hur, Cheol‐Goo Choi, Doil Li, Chang‐Bao Zhao, Jiuhai Jiang, Hongling Geng, Yu Dai, Yuanyuan Fan, Huajie Chen, Jinfeng Lu, Fei Shi, Jinfeng Sun, Shouhong Chen, Jianjun Yang, Xiaohua Lu, Chen Chen, Mingsheng Cheng, Zhukuan Li, Chuanyou Ling, Hongqing Xue, Yongbiao Wang, Ying Seymour, Graham B. Bishop, Gerard J. Bryan, Glenn Rogers, Jane Sims, Sarah Butcher, Sarah Buchan, Daniel Abbott, James Beasley, Helen Nicholson, Christine Riddle, Clare Humphray, Sean McLaren, Karen Mathur, Saloni Vyas, Shailendra Solanke, Amolkumar U. Kumar, Rahul Gupta, Vikrant Sharma, Arun K. Khurana, Paramjit Khurana, Jitendra P. Tyagi, Akhilesh Sarita Chowdhury, Parul Shridhar, Smriti Chattopadhyay, Debasis Pandit, Awadhesh Singh, Pradeep Kumar, Ajay Dixit, Rekha Singh, Archana Praveen, Sumera Dalal, Vivek Yadav, Mahavir Ghazi, Irfan Ahmad Gaikwad, Kishor Sharma, Tilak Raj Mohapatra, Trilochan Singh, Nagendra Kumar Szinay, Dóra de Jong, Hans Peters, Sander van Staveren, Marjo Datema, Erwin Fiers, Mark W.E.J. van Ham, Roeland C.H.J. Lindhout, P. Philippot, Murielle Frasse, Pierre Regad, Farid Zouine, Mohamed Bouzayen, Mondher Asamizu, Erika Sato, Shusei Fukuoka, Hiroyuki Tabata, Satoshi Shibata, Daisuke Botella, Miguel A. Perez‐Alonso, M. Fernandez‐Pedrosa, V. Osorio, Sonia Mico, Amparo Granell, Antonio Zhang, Zhonghua He, Jun Huang, Sanwen Du, Yongchen Qu, Dongyu Liu,, Longfei Liu, Dongyuan Wang, Jun Ye, Zhibiao Yang, Wencai Wang, Guoping Vezzi, Alessandro Todesco, Sara Valle, Giorgio Falcone, Giulia Pietrella, Marco Giuliano, Giovanni Grandillo, Silvana Traini, Alessandra D'Agostino, Nunzio Chiusano, Maria Luisa Ercolano, Mara Barone, Amalia Frusciante, Luigi Schoof, Heiko Jöcker, Anika Bruggmann, Rémy Spannagl, Manuel Mayer, Klaus X.F. Guigó, Roderic Camara, Francisco Rombauts, Stephane Fawcett, Jeffrey A. Van de Peer, Yves Knapp, Sandra Zamir, Dani Stiekema, Willem The Plant Genome A Snapshot of the Emerging Tomato Genome Sequence Plant Science Agronomy and Crop Science Genetics |
author_sort |
mueller, lukas a. |
spelling |
Mueller, Lukas A. Lankhorst, René Klein Tanksley, Steven D. Giovannoni, James J. White, Ruth Vrebalov, Julia Fei, Zhangjun van Eck, Joyce Buels, Robert Mills, Adri A. Menda, Naama Tecle, Isaak Y. Bombarely, Aureliano Stack, Stephen Royer, Suzanne M. Chang, Song‐Bin Shearer, Lindsay A. Kim, Byung Dong Jo, Sung‐Hwan Hur, Cheol‐Goo Choi, Doil Li, Chang‐Bao Zhao, Jiuhai Jiang, Hongling Geng, Yu Dai, Yuanyuan Fan, Huajie Chen, Jinfeng Lu, Fei Shi, Jinfeng Sun, Shouhong Chen, Jianjun Yang, Xiaohua Lu, Chen Chen, Mingsheng Cheng, Zhukuan Li, Chuanyou Ling, Hongqing Xue, Yongbiao Wang, Ying Seymour, Graham B. Bishop, Gerard J. Bryan, Glenn Rogers, Jane Sims, Sarah Butcher, Sarah Buchan, Daniel Abbott, James Beasley, Helen Nicholson, Christine Riddle, Clare Humphray, Sean McLaren, Karen Mathur, Saloni Vyas, Shailendra Solanke, Amolkumar U. Kumar, Rahul Gupta, Vikrant Sharma, Arun K. Khurana, Paramjit Khurana, Jitendra P. Tyagi, Akhilesh Sarita Chowdhury, Parul Shridhar, Smriti Chattopadhyay, Debasis Pandit, Awadhesh Singh, Pradeep Kumar, Ajay Dixit, Rekha Singh, Archana Praveen, Sumera Dalal, Vivek Yadav, Mahavir Ghazi, Irfan Ahmad Gaikwad, Kishor Sharma, Tilak Raj Mohapatra, Trilochan Singh, Nagendra Kumar Szinay, Dóra de Jong, Hans Peters, Sander van Staveren, Marjo Datema, Erwin Fiers, Mark W.E.J. van Ham, Roeland C.H.J. Lindhout, P. Philippot, Murielle Frasse, Pierre Regad, Farid Zouine, Mohamed Bouzayen, Mondher Asamizu, Erika Sato, Shusei Fukuoka, Hiroyuki Tabata, Satoshi Shibata, Daisuke Botella, Miguel A. Perez‐Alonso, M. Fernandez‐Pedrosa, V. Osorio, Sonia Mico, Amparo Granell, Antonio Zhang, Zhonghua He, Jun Huang, Sanwen Du, Yongchen Qu, Dongyu Liu,, Longfei Liu, Dongyuan Wang, Jun Ye, Zhibiao Yang, Wencai Wang, Guoping Vezzi, Alessandro Todesco, Sara Valle, Giorgio Falcone, Giulia Pietrella, Marco Giuliano, Giovanni Grandillo, Silvana Traini, Alessandra D'Agostino, Nunzio Chiusano, Maria Luisa Ercolano, Mara Barone, Amalia Frusciante, Luigi Schoof, Heiko Jöcker, Anika Bruggmann, Rémy Spannagl, Manuel Mayer, Klaus X.F. Guigó, Roderic Camara, Francisco Rombauts, Stephane Fawcett, Jeffrey A. Van de Peer, Yves Knapp, Sandra Zamir, Dani Stiekema, Willem 1940-3372 1940-3372 Wiley Plant Science Agronomy and Crop Science Genetics http://dx.doi.org/10.3835/plantgenome2008.08.0005 <jats:p>The genome of tomato (<jats:italic>Solanum lycopersicum</jats:italic> L.) is being sequenced by an international consortium of 10 countries (Korea, China, the United Kingdom, India, the Netherlands, France, Japan, Spain, Italy, and the United States) as part of the larger “International Solanaceae Genome Project (SOL): Systems Approach to Diversity and Adaptation” initiative. The tomato genome sequencing project uses an ordered bacterial artificial chromosome (BAC) approach to generate a high‐quality tomato euchromatic genome sequence for use as a reference genome for the Solanaceae and euasterids. Sequence is deposited at GenBank and at the SOL Genomics Network (SGN). Currently, there are around 1000 BACs finished or in progress, representing more than a third of the projected euchromatic portion of the genome. An annotation effort is also underway by the International Tomato Annotation Group. The expected number of genes in the euchromatin is ∼40,000, based on an estimate from a preliminary annotation of 11% of finished sequence. Here, we present this first snapshot of the emerging tomato genome and its annotation, a short comparison with potato (<jats:italic>Solanum tuberosum</jats:italic> L.) sequence data, and the tools available for the researchers to exploit this new resource are also presented. In the future, whole‐genome shotgun techniques will be combined with the BAC‐by‐BAC approach to cover the entire tomato genome. The high‐quality reference euchromatic tomato sequence is expected to be near completion by 2010.</jats:p> A Snapshot of the Emerging Tomato Genome Sequence The Plant Genome |
doi_str_mv |
10.3835/plantgenome2008.08.0005 |
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Online Free |
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Biologie Land- und Forstwirtschaft, Gartenbau, Fischereiwirtschaft, Hauswirtschaft |
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ElectronicArticle |
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2009 |
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Wiley |
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The Plant Genome |
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49 |
title |
A Snapshot of the Emerging Tomato Genome Sequence |
title_unstemmed |
A Snapshot of the Emerging Tomato Genome Sequence |
title_full |
A Snapshot of the Emerging Tomato Genome Sequence |
title_fullStr |
A Snapshot of the Emerging Tomato Genome Sequence |
title_full_unstemmed |
A Snapshot of the Emerging Tomato Genome Sequence |
title_short |
A Snapshot of the Emerging Tomato Genome Sequence |
title_sort |
a snapshot of the emerging tomato genome sequence |
topic |
Plant Science Agronomy and Crop Science Genetics |
url |
http://dx.doi.org/10.3835/plantgenome2008.08.0005 |
publishDate |
2009 |
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description |
<jats:p>The genome of tomato (<jats:italic>Solanum lycopersicum</jats:italic> L.) is being sequenced by an international consortium of 10 countries (Korea, China, the United Kingdom, India, the Netherlands, France, Japan, Spain, Italy, and the United States) as part of the larger “International Solanaceae Genome Project (SOL): Systems Approach to Diversity and Adaptation” initiative. The tomato genome sequencing project uses an ordered bacterial artificial chromosome (BAC) approach to generate a high‐quality tomato euchromatic genome sequence for use as a reference genome for the Solanaceae and euasterids. Sequence is deposited at GenBank and at the SOL Genomics Network (SGN). Currently, there are around 1000 BACs finished or in progress, representing more than a third of the projected euchromatic portion of the genome. An annotation effort is also underway by the International Tomato Annotation Group. The expected number of genes in the euchromatin is ∼40,000, based on an estimate from a preliminary annotation of 11% of finished sequence. Here, we present this first snapshot of the emerging tomato genome and its annotation, a short comparison with potato (<jats:italic>Solanum tuberosum</jats:italic> L.) sequence data, and the tools available for the researchers to exploit this new resource are also presented. In the future, whole‐genome shotgun techniques will be combined with the BAC‐by‐BAC approach to cover the entire tomato genome. The high‐quality reference euchromatic tomato sequence is expected to be near completion by 2010.</jats:p> |
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author | Mueller, Lukas A., Lankhorst, René Klein, Tanksley, Steven D., Giovannoni, James J., White, Ruth, Vrebalov, Julia, Fei, Zhangjun, van Eck, Joyce, Buels, Robert, Mills, Adri A., Menda, Naama, Tecle, Isaak Y., Bombarely, Aureliano, Stack, Stephen, Royer, Suzanne M., Chang, Song‐Bin, Shearer, Lindsay A., Kim, Byung Dong, Jo, Sung‐Hwan, Hur, Cheol‐Goo, Choi, Doil, Li, Chang‐Bao, Zhao, Jiuhai, Jiang, Hongling, Geng, Yu, Dai, Yuanyuan, Fan, Huajie, Chen, Jinfeng, Lu, Fei, Shi, Jinfeng, Sun, Shouhong, Chen, Jianjun, Yang, Xiaohua, Lu, Chen, Chen, Mingsheng, Cheng, Zhukuan, Li, Chuanyou, Ling, Hongqing, Xue, Yongbiao, Wang, Ying, Seymour, Graham B., Bishop, Gerard J., Bryan, Glenn, Rogers, Jane, Sims, Sarah, Butcher, Sarah, Buchan, Daniel, Abbott, James, Beasley, Helen, Nicholson, Christine, Riddle, Clare, Humphray, Sean, McLaren, Karen, Mathur, Saloni, Vyas, Shailendra, Solanke, Amolkumar U., Kumar, Rahul, Gupta, Vikrant, Sharma, Arun K., Khurana, Paramjit, Khurana, Jitendra P., Tyagi, Akhilesh, Sarita, Chowdhury, Parul, Shridhar, Smriti, Chattopadhyay, Debasis, Pandit, Awadhesh, Singh, Pradeep, Kumar, Ajay, Dixit, Rekha, Singh, Archana, Praveen, Sumera, Dalal, Vivek, Yadav, Mahavir, Ghazi, Irfan Ahmad, Gaikwad, Kishor, Sharma, Tilak Raj, Mohapatra, Trilochan, Singh, Nagendra Kumar, Szinay, Dóra, de Jong, Hans, Peters, Sander, van Staveren, Marjo, Datema, Erwin, Fiers, Mark W.E.J., van Ham, Roeland C.H.J., Lindhout, P., Philippot, Murielle, Frasse, Pierre, Regad, Farid, Zouine, Mohamed, Bouzayen, Mondher, Asamizu, Erika, Sato, Shusei, Fukuoka, Hiroyuki, Tabata, Satoshi, Shibata, Daisuke, Botella, Miguel A., Perez‐Alonso, M., Fernandez‐Pedrosa, V., Osorio, Sonia, Mico, Amparo, Granell, Antonio, Zhang, Zhonghua, He, Jun, Huang, Sanwen, Du, Yongchen, Qu, Dongyu, Liu,, Longfei, Liu, Dongyuan, Wang, Jun, Ye, Zhibiao, Yang, Wencai, Wang, Guoping, Vezzi, Alessandro, Todesco, Sara, Valle, Giorgio, Falcone, Giulia, Pietrella, Marco, Giuliano, Giovanni, Grandillo, Silvana, Traini, Alessandra, D'Agostino, Nunzio, Chiusano, Maria Luisa, Ercolano, Mara, Barone, Amalia, Frusciante, Luigi, Schoof, Heiko, Jöcker, Anika, Bruggmann, Rémy, Spannagl, Manuel, Mayer, Klaus X.F., Guigó, Roderic, Camara, Francisco, Rombauts, Stephane, Fawcett, Jeffrey A., Van de Peer, Yves, Knapp, Sandra, Zamir, Dani, Stiekema, Willem |
author_facet | Mueller, Lukas A., Lankhorst, René Klein, Tanksley, Steven D., Giovannoni, James J., White, Ruth, Vrebalov, Julia, Fei, Zhangjun, van Eck, Joyce, Buels, Robert, Mills, Adri A., Menda, Naama, Tecle, Isaak Y., Bombarely, Aureliano, Stack, Stephen, Royer, Suzanne M., Chang, Song‐Bin, Shearer, Lindsay A., Kim, Byung Dong, Jo, Sung‐Hwan, Hur, Cheol‐Goo, Choi, Doil, Li, Chang‐Bao, Zhao, Jiuhai, Jiang, Hongling, Geng, Yu, Dai, Yuanyuan, Fan, Huajie, Chen, Jinfeng, Lu, Fei, Shi, Jinfeng, Sun, Shouhong, Chen, Jianjun, Yang, Xiaohua, Lu, Chen, Chen, Mingsheng, Cheng, Zhukuan, Li, Chuanyou, Ling, Hongqing, Xue, Yongbiao, Wang, Ying, Seymour, Graham B., Bishop, Gerard J., Bryan, Glenn, Rogers, Jane, Sims, Sarah, Butcher, Sarah, Buchan, Daniel, Abbott, James, Beasley, Helen, Nicholson, Christine, Riddle, Clare, Humphray, Sean, McLaren, Karen, Mathur, Saloni, Vyas, Shailendra, Solanke, Amolkumar U., Kumar, Rahul, Gupta, Vikrant, Sharma, Arun K., Khurana, Paramjit, Khurana, Jitendra P., Tyagi, Akhilesh, Sarita, Chowdhury, Parul, Shridhar, Smriti, Chattopadhyay, Debasis, Pandit, Awadhesh, Singh, Pradeep, Kumar, Ajay, Dixit, Rekha, Singh, Archana, Praveen, Sumera, Dalal, Vivek, Yadav, Mahavir, Ghazi, Irfan Ahmad, Gaikwad, Kishor, Sharma, Tilak Raj, Mohapatra, Trilochan, Singh, Nagendra Kumar, Szinay, Dóra, de Jong, Hans, Peters, Sander, van Staveren, Marjo, Datema, Erwin, Fiers, Mark W.E.J., van Ham, Roeland C.H.J., Lindhout, P., Philippot, Murielle, Frasse, Pierre, Regad, Farid, Zouine, Mohamed, Bouzayen, Mondher, Asamizu, Erika, Sato, Shusei, Fukuoka, Hiroyuki, Tabata, Satoshi, Shibata, Daisuke, Botella, Miguel A., Perez‐Alonso, M., Fernandez‐Pedrosa, V., Osorio, Sonia, Mico, Amparo, Granell, Antonio, Zhang, Zhonghua, He, Jun, Huang, Sanwen, Du, Yongchen, Qu, Dongyu, Liu,, Longfei, Liu, Dongyuan, Wang, Jun, Ye, Zhibiao, Yang, Wencai, Wang, Guoping, Vezzi, Alessandro, Todesco, Sara, Valle, Giorgio, Falcone, Giulia, Pietrella, Marco, Giuliano, Giovanni, Grandillo, Silvana, Traini, Alessandra, D'Agostino, Nunzio, Chiusano, Maria Luisa, Ercolano, Mara, Barone, Amalia, Frusciante, Luigi, Schoof, Heiko, Jöcker, Anika, Bruggmann, Rémy, Spannagl, Manuel, Mayer, Klaus X.F., Guigó, Roderic, Camara, Francisco, Rombauts, Stephane, Fawcett, Jeffrey A., Van de Peer, Yves, Knapp, Sandra, Zamir, Dani, Stiekema, Willem, Mueller, Lukas A., Lankhorst, René Klein, Tanksley, Steven D., Giovannoni, James J., White, Ruth, Vrebalov, Julia, Fei, Zhangjun, van Eck, Joyce, Buels, Robert, Mills, Adri A., Menda, Naama, Tecle, Isaak Y., Bombarely, Aureliano, Stack, Stephen, Royer, Suzanne M., Chang, Song‐Bin, Shearer, Lindsay A., Kim, Byung Dong, Jo, Sung‐Hwan, Hur, Cheol‐Goo, Choi, Doil, Li, Chang‐Bao, Zhao, Jiuhai, Jiang, Hongling, Geng, Yu, Dai, Yuanyuan, Fan, Huajie, Chen, Jinfeng, Lu, Fei, Shi, Jinfeng, Sun, Shouhong, Chen, Jianjun, Yang, Xiaohua, Lu, Chen, Chen, Mingsheng, Cheng, Zhukuan, Li, Chuanyou, Ling, Hongqing, Xue, Yongbiao, Wang, Ying, Seymour, Graham B., Bishop, Gerard J., Bryan, Glenn, Rogers, Jane, Sims, Sarah, Butcher, Sarah, Buchan, Daniel, Abbott, James, Beasley, Helen, Nicholson, Christine, Riddle, Clare, Humphray, Sean, McLaren, Karen, Mathur, Saloni, Vyas, Shailendra, Solanke, Amolkumar U., Kumar, Rahul, Gupta, Vikrant, Sharma, Arun K., Khurana, Paramjit, Khurana, Jitendra P., Tyagi, Akhilesh, Sarita, Chowdhury, Parul, Shridhar, Smriti, Chattopadhyay, Debasis, Pandit, Awadhesh, Singh, Pradeep, Kumar, Ajay, Dixit, Rekha, Singh, Archana, Praveen, Sumera, Dalal, Vivek, Yadav, Mahavir, Ghazi, Irfan Ahmad, Gaikwad, Kishor, Sharma, Tilak Raj, Mohapatra, Trilochan, Singh, Nagendra Kumar, Szinay, Dóra, de Jong, Hans, Peters, Sander, van Staveren, Marjo, Datema, Erwin, Fiers, Mark W.E.J., van Ham, Roeland C.H.J., Lindhout, P., Philippot, Murielle, Frasse, Pierre, Regad, Farid, Zouine, Mohamed, Bouzayen, Mondher, Asamizu, Erika, Sato, Shusei, Fukuoka, Hiroyuki, Tabata, Satoshi, Shibata, Daisuke, Botella, Miguel A., Perez‐Alonso, M., Fernandez‐Pedrosa, V., Osorio, Sonia, Mico, Amparo, Granell, Antonio, Zhang, Zhonghua, He, Jun, Huang, Sanwen, Du, Yongchen, Qu, Dongyu, Liu,, Longfei, Liu, Dongyuan, Wang, Jun, Ye, Zhibiao, Yang, Wencai, Wang, Guoping, Vezzi, Alessandro, Todesco, Sara, Valle, Giorgio, Falcone, Giulia, Pietrella, Marco, Giuliano, Giovanni, Grandillo, Silvana, Traini, Alessandra, D'Agostino, Nunzio, Chiusano, Maria Luisa, Ercolano, Mara, Barone, Amalia, Frusciante, Luigi, Schoof, Heiko, Jöcker, Anika, Bruggmann, Rémy, Spannagl, Manuel, Mayer, Klaus X.F., Guigó, Roderic, Camara, Francisco, Rombauts, Stephane, Fawcett, Jeffrey A., Van de Peer, Yves, Knapp, Sandra, Zamir, Dani, Stiekema, Willem |
author_sort | mueller, lukas a. |
container_issue | 1 |
container_start_page | 0 |
container_title | The Plant Genome |
container_volume | 2 |
description | <jats:p>The genome of tomato (<jats:italic>Solanum lycopersicum</jats:italic> L.) is being sequenced by an international consortium of 10 countries (Korea, China, the United Kingdom, India, the Netherlands, France, Japan, Spain, Italy, and the United States) as part of the larger “International Solanaceae Genome Project (SOL): Systems Approach to Diversity and Adaptation” initiative. The tomato genome sequencing project uses an ordered bacterial artificial chromosome (BAC) approach to generate a high‐quality tomato euchromatic genome sequence for use as a reference genome for the Solanaceae and euasterids. Sequence is deposited at GenBank and at the SOL Genomics Network (SGN). Currently, there are around 1000 BACs finished or in progress, representing more than a third of the projected euchromatic portion of the genome. An annotation effort is also underway by the International Tomato Annotation Group. The expected number of genes in the euchromatin is ∼40,000, based on an estimate from a preliminary annotation of 11% of finished sequence. Here, we present this first snapshot of the emerging tomato genome and its annotation, a short comparison with potato (<jats:italic>Solanum tuberosum</jats:italic> L.) sequence data, and the tools available for the researchers to exploit this new resource are also presented. In the future, whole‐genome shotgun techniques will be combined with the BAC‐by‐BAC approach to cover the entire tomato genome. The high‐quality reference euchromatic tomato sequence is expected to be near completion by 2010.</jats:p> |
doi_str_mv | 10.3835/plantgenome2008.08.0005 |
facet_avail | Online, Free |
finc_class_facet | Biologie, Land- und Forstwirtschaft, Gartenbau, Fischereiwirtschaft, Hauswirtschaft |
format | ElectronicArticle |
format_de105 | Article, E-Article |
format_de14 | Article, E-Article |
format_de15 | Article, E-Article |
format_de520 | Article, E-Article |
format_de540 | Article, E-Article |
format_dech1 | Article, E-Article |
format_ded117 | Article, E-Article |
format_degla1 | E-Article |
format_del152 | Buch |
format_del189 | Article, E-Article |
format_dezi4 | Article |
format_dezwi2 | Article, E-Article |
format_finc | Article, E-Article |
format_nrw | Article, E-Article |
geogr_code | not assigned |
geogr_code_person | not assigned |
id | ai-49-aHR0cDovL2R4LmRvaS5vcmcvMTAuMzgzNS9wbGFudGdlbm9tZTIwMDguMDguMDAwNQ |
imprint | Wiley, 2009 |
imprint_str_mv | Wiley, 2009 |
institution | DE-Bn3, DE-Brt1, DE-Zwi2, DE-D161, DE-Gla1, DE-Zi4, DE-15, DE-Pl11, DE-Rs1, DE-105, DE-14, DE-Ch1, DE-L229, DE-D275 |
issn | 1940-3372 |
issn_str_mv | 1940-3372 |
language | English |
last_indexed | 2024-03-01T16:27:44.96Z |
match_str | mueller2009asnapshotoftheemergingtomatogenomesequence |
mega_collection | Wiley (CrossRef) |
physical | |
publishDate | 2009 |
publishDateSort | 2009 |
publisher | Wiley |
record_format | ai |
recordtype | ai |
series | The Plant Genome |
source_id | 49 |
spelling | Mueller, Lukas A. Lankhorst, René Klein Tanksley, Steven D. Giovannoni, James J. White, Ruth Vrebalov, Julia Fei, Zhangjun van Eck, Joyce Buels, Robert Mills, Adri A. Menda, Naama Tecle, Isaak Y. Bombarely, Aureliano Stack, Stephen Royer, Suzanne M. Chang, Song‐Bin Shearer, Lindsay A. Kim, Byung Dong Jo, Sung‐Hwan Hur, Cheol‐Goo Choi, Doil Li, Chang‐Bao Zhao, Jiuhai Jiang, Hongling Geng, Yu Dai, Yuanyuan Fan, Huajie Chen, Jinfeng Lu, Fei Shi, Jinfeng Sun, Shouhong Chen, Jianjun Yang, Xiaohua Lu, Chen Chen, Mingsheng Cheng, Zhukuan Li, Chuanyou Ling, Hongqing Xue, Yongbiao Wang, Ying Seymour, Graham B. Bishop, Gerard J. Bryan, Glenn Rogers, Jane Sims, Sarah Butcher, Sarah Buchan, Daniel Abbott, James Beasley, Helen Nicholson, Christine Riddle, Clare Humphray, Sean McLaren, Karen Mathur, Saloni Vyas, Shailendra Solanke, Amolkumar U. Kumar, Rahul Gupta, Vikrant Sharma, Arun K. Khurana, Paramjit Khurana, Jitendra P. Tyagi, Akhilesh Sarita Chowdhury, Parul Shridhar, Smriti Chattopadhyay, Debasis Pandit, Awadhesh Singh, Pradeep Kumar, Ajay Dixit, Rekha Singh, Archana Praveen, Sumera Dalal, Vivek Yadav, Mahavir Ghazi, Irfan Ahmad Gaikwad, Kishor Sharma, Tilak Raj Mohapatra, Trilochan Singh, Nagendra Kumar Szinay, Dóra de Jong, Hans Peters, Sander van Staveren, Marjo Datema, Erwin Fiers, Mark W.E.J. van Ham, Roeland C.H.J. Lindhout, P. Philippot, Murielle Frasse, Pierre Regad, Farid Zouine, Mohamed Bouzayen, Mondher Asamizu, Erika Sato, Shusei Fukuoka, Hiroyuki Tabata, Satoshi Shibata, Daisuke Botella, Miguel A. Perez‐Alonso, M. Fernandez‐Pedrosa, V. Osorio, Sonia Mico, Amparo Granell, Antonio Zhang, Zhonghua He, Jun Huang, Sanwen Du, Yongchen Qu, Dongyu Liu,, Longfei Liu, Dongyuan Wang, Jun Ye, Zhibiao Yang, Wencai Wang, Guoping Vezzi, Alessandro Todesco, Sara Valle, Giorgio Falcone, Giulia Pietrella, Marco Giuliano, Giovanni Grandillo, Silvana Traini, Alessandra D'Agostino, Nunzio Chiusano, Maria Luisa Ercolano, Mara Barone, Amalia Frusciante, Luigi Schoof, Heiko Jöcker, Anika Bruggmann, Rémy Spannagl, Manuel Mayer, Klaus X.F. Guigó, Roderic Camara, Francisco Rombauts, Stephane Fawcett, Jeffrey A. Van de Peer, Yves Knapp, Sandra Zamir, Dani Stiekema, Willem 1940-3372 1940-3372 Wiley Plant Science Agronomy and Crop Science Genetics http://dx.doi.org/10.3835/plantgenome2008.08.0005 <jats:p>The genome of tomato (<jats:italic>Solanum lycopersicum</jats:italic> L.) is being sequenced by an international consortium of 10 countries (Korea, China, the United Kingdom, India, the Netherlands, France, Japan, Spain, Italy, and the United States) as part of the larger “International Solanaceae Genome Project (SOL): Systems Approach to Diversity and Adaptation” initiative. The tomato genome sequencing project uses an ordered bacterial artificial chromosome (BAC) approach to generate a high‐quality tomato euchromatic genome sequence for use as a reference genome for the Solanaceae and euasterids. Sequence is deposited at GenBank and at the SOL Genomics Network (SGN). Currently, there are around 1000 BACs finished or in progress, representing more than a third of the projected euchromatic portion of the genome. An annotation effort is also underway by the International Tomato Annotation Group. The expected number of genes in the euchromatin is ∼40,000, based on an estimate from a preliminary annotation of 11% of finished sequence. Here, we present this first snapshot of the emerging tomato genome and its annotation, a short comparison with potato (<jats:italic>Solanum tuberosum</jats:italic> L.) sequence data, and the tools available for the researchers to exploit this new resource are also presented. In the future, whole‐genome shotgun techniques will be combined with the BAC‐by‐BAC approach to cover the entire tomato genome. The high‐quality reference euchromatic tomato sequence is expected to be near completion by 2010.</jats:p> A Snapshot of the Emerging Tomato Genome Sequence The Plant Genome |
spellingShingle | Mueller, Lukas A., Lankhorst, René Klein, Tanksley, Steven D., Giovannoni, James J., White, Ruth, Vrebalov, Julia, Fei, Zhangjun, van Eck, Joyce, Buels, Robert, Mills, Adri A., Menda, Naama, Tecle, Isaak Y., Bombarely, Aureliano, Stack, Stephen, Royer, Suzanne M., Chang, Song‐Bin, Shearer, Lindsay A., Kim, Byung Dong, Jo, Sung‐Hwan, Hur, Cheol‐Goo, Choi, Doil, Li, Chang‐Bao, Zhao, Jiuhai, Jiang, Hongling, Geng, Yu, Dai, Yuanyuan, Fan, Huajie, Chen, Jinfeng, Lu, Fei, Shi, Jinfeng, Sun, Shouhong, Chen, Jianjun, Yang, Xiaohua, Lu, Chen, Chen, Mingsheng, Cheng, Zhukuan, Li, Chuanyou, Ling, Hongqing, Xue, Yongbiao, Wang, Ying, Seymour, Graham B., Bishop, Gerard J., Bryan, Glenn, Rogers, Jane, Sims, Sarah, Butcher, Sarah, Buchan, Daniel, Abbott, James, Beasley, Helen, Nicholson, Christine, Riddle, Clare, Humphray, Sean, McLaren, Karen, Mathur, Saloni, Vyas, Shailendra, Solanke, Amolkumar U., Kumar, Rahul, Gupta, Vikrant, Sharma, Arun K., Khurana, Paramjit, Khurana, Jitendra P., Tyagi, Akhilesh, Sarita, Chowdhury, Parul, Shridhar, Smriti, Chattopadhyay, Debasis, Pandit, Awadhesh, Singh, Pradeep, Kumar, Ajay, Dixit, Rekha, Singh, Archana, Praveen, Sumera, Dalal, Vivek, Yadav, Mahavir, Ghazi, Irfan Ahmad, Gaikwad, Kishor, Sharma, Tilak Raj, Mohapatra, Trilochan, Singh, Nagendra Kumar, Szinay, Dóra, de Jong, Hans, Peters, Sander, van Staveren, Marjo, Datema, Erwin, Fiers, Mark W.E.J., van Ham, Roeland C.H.J., Lindhout, P., Philippot, Murielle, Frasse, Pierre, Regad, Farid, Zouine, Mohamed, Bouzayen, Mondher, Asamizu, Erika, Sato, Shusei, Fukuoka, Hiroyuki, Tabata, Satoshi, Shibata, Daisuke, Botella, Miguel A., Perez‐Alonso, M., Fernandez‐Pedrosa, V., Osorio, Sonia, Mico, Amparo, Granell, Antonio, Zhang, Zhonghua, He, Jun, Huang, Sanwen, Du, Yongchen, Qu, Dongyu, Liu,, Longfei, Liu, Dongyuan, Wang, Jun, Ye, Zhibiao, Yang, Wencai, Wang, Guoping, Vezzi, Alessandro, Todesco, Sara, Valle, Giorgio, Falcone, Giulia, Pietrella, Marco, Giuliano, Giovanni, Grandillo, Silvana, Traini, Alessandra, D'Agostino, Nunzio, Chiusano, Maria Luisa, Ercolano, Mara, Barone, Amalia, Frusciante, Luigi, Schoof, Heiko, Jöcker, Anika, Bruggmann, Rémy, Spannagl, Manuel, Mayer, Klaus X.F., Guigó, Roderic, Camara, Francisco, Rombauts, Stephane, Fawcett, Jeffrey A., Van de Peer, Yves, Knapp, Sandra, Zamir, Dani, Stiekema, Willem, The Plant Genome, A Snapshot of the Emerging Tomato Genome Sequence, Plant Science, Agronomy and Crop Science, Genetics |
title | A Snapshot of the Emerging Tomato Genome Sequence |
title_full | A Snapshot of the Emerging Tomato Genome Sequence |
title_fullStr | A Snapshot of the Emerging Tomato Genome Sequence |
title_full_unstemmed | A Snapshot of the Emerging Tomato Genome Sequence |
title_short | A Snapshot of the Emerging Tomato Genome Sequence |
title_sort | a snapshot of the emerging tomato genome sequence |
title_unstemmed | A Snapshot of the Emerging Tomato Genome Sequence |
topic | Plant Science, Agronomy and Crop Science, Genetics |
url | http://dx.doi.org/10.3835/plantgenome2008.08.0005 |