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Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea

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Zeitschriftentitel: ZooKeys
Personen und Körperschaften: Cao, Jin–Jun, Wang, Ying, Huang, Yao–Rui, Li, Wei–Hai
In: ZooKeys, 835, 2019, S. 43-63
Format: E-Article
Sprache: Unbestimmt
veröffentlicht:
Pensoft Publishers
Schlagwörter:
Animal Science and Zoology
Ecology, Evolution, Behavior and Systematics
author_facet Cao, Jin–Jun
Wang, Ying
Huang, Yao–Rui
Li, Wei–Hai
Cao, Jin–Jun
Wang, Ying
Huang, Yao–Rui
Li, Wei–Hai
author Cao, Jin–Jun
Wang, Ying
Huang, Yao–Rui
Li, Wei–Hai
spellingShingle Cao, Jin–Jun
Wang, Ying
Huang, Yao–Rui
Li, Wei–Hai
ZooKeys
Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea
Animal Science and Zoology
Ecology, Evolution, Behavior and Systematics
author_sort cao, jin–jun
spelling Cao, Jin–Jun Wang, Ying Huang, Yao–Rui Li, Wei–Hai 1313-2970 1313-2989 Pensoft Publishers Animal Science and Zoology Ecology, Evolution, Behavior and Systematics http://dx.doi.org/10.3897/zookeys.835.32470 <jats:p>In this study, two new mitochondrial genomes (mitogenomes) of<jats:italic>Mesonemourametafiligera</jats:italic>and<jats:italic>Mesonemouratritaenia</jats:italic>from the family Nemouridae (Insecta: Plecoptera) were sequenced. The<jats:italic>Mesonemourametafiligera</jats:italic>mitogenome was a 15,739 bp circular DNA molecule, which was smaller than that of<jats:italic>M.tritaenia</jats:italic>(15,778 bp) due to differences in the size of the A+T-rich region. Results show that gene content, gene arrangement, base composition, and codon usage were highly conserved in two species. Ka/Ks ratios analyses of protein-coding genes revealed that the highest and lowest rates were found in ND6 and COI and that all these genes were evolving under purifying selection. All tRNA genes in nemourid mitogenomes had a typical cloverleaf secondary structure, except for tRNA<jats:sup>Ser(AGN)</jats:sup>which appeared to lack the dihydrouridine arm. The multiple alignments of nemourid lrRNA and srRNA genes showed that sequences of three species were highly conserved. All the A+T-rich region included tandem repeats regions and stem-loop structures. The phylogenetic analyses using Bayesian inference (BI) and maximum likelihood methods (ML) generated identical results. Amphinemurinae and Nemourinae were sister-groups and the family Nemouridae was placed as sister to Capniidae and Taeniopterygidae.</jats:p> Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea ZooKeys
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title Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea
title_unstemmed Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea
title_full Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea
title_fullStr Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea
title_full_unstemmed Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea
title_short Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea
title_sort mitochondrial genomes of the stoneflies mesonemoura metafiligera and mesonemoura tritaenia (plecoptera, nemouridae), with a phylogenetic analysis of nemouroidea
topic Animal Science and Zoology
Ecology, Evolution, Behavior and Systematics
url http://dx.doi.org/10.3897/zookeys.835.32470
publishDate 2019
physical 43-63
description <jats:p>In this study, two new mitochondrial genomes (mitogenomes) of<jats:italic>Mesonemourametafiligera</jats:italic>and<jats:italic>Mesonemouratritaenia</jats:italic>from the family Nemouridae (Insecta: Plecoptera) were sequenced. The<jats:italic>Mesonemourametafiligera</jats:italic>mitogenome was a 15,739 bp circular DNA molecule, which was smaller than that of<jats:italic>M.tritaenia</jats:italic>(15,778 bp) due to differences in the size of the A+T-rich region. Results show that gene content, gene arrangement, base composition, and codon usage were highly conserved in two species. Ka/Ks ratios analyses of protein-coding genes revealed that the highest and lowest rates were found in ND6 and COI and that all these genes were evolving under purifying selection. All tRNA genes in nemourid mitogenomes had a typical cloverleaf secondary structure, except for tRNA<jats:sup>Ser(AGN)</jats:sup>which appeared to lack the dihydrouridine arm. The multiple alignments of nemourid lrRNA and srRNA genes showed that sequences of three species were highly conserved. All the A+T-rich region included tandem repeats regions and stem-loop structures. The phylogenetic analyses using Bayesian inference (BI) and maximum likelihood methods (ML) generated identical results. Amphinemurinae and Nemourinae were sister-groups and the family Nemouridae was placed as sister to Capniidae and Taeniopterygidae.</jats:p>
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author Cao, Jin–Jun, Wang, Ying, Huang, Yao–Rui, Li, Wei–Hai
author_facet Cao, Jin–Jun, Wang, Ying, Huang, Yao–Rui, Li, Wei–Hai, Cao, Jin–Jun, Wang, Ying, Huang, Yao–Rui, Li, Wei–Hai
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description <jats:p>In this study, two new mitochondrial genomes (mitogenomes) of<jats:italic>Mesonemourametafiligera</jats:italic>and<jats:italic>Mesonemouratritaenia</jats:italic>from the family Nemouridae (Insecta: Plecoptera) were sequenced. The<jats:italic>Mesonemourametafiligera</jats:italic>mitogenome was a 15,739 bp circular DNA molecule, which was smaller than that of<jats:italic>M.tritaenia</jats:italic>(15,778 bp) due to differences in the size of the A+T-rich region. Results show that gene content, gene arrangement, base composition, and codon usage were highly conserved in two species. Ka/Ks ratios analyses of protein-coding genes revealed that the highest and lowest rates were found in ND6 and COI and that all these genes were evolving under purifying selection. All tRNA genes in nemourid mitogenomes had a typical cloverleaf secondary structure, except for tRNA<jats:sup>Ser(AGN)</jats:sup>which appeared to lack the dihydrouridine arm. The multiple alignments of nemourid lrRNA and srRNA genes showed that sequences of three species were highly conserved. All the A+T-rich region included tandem repeats regions and stem-loop structures. The phylogenetic analyses using Bayesian inference (BI) and maximum likelihood methods (ML) generated identical results. Amphinemurinae and Nemourinae were sister-groups and the family Nemouridae was placed as sister to Capniidae and Taeniopterygidae.</jats:p>
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spelling Cao, Jin–Jun Wang, Ying Huang, Yao–Rui Li, Wei–Hai 1313-2970 1313-2989 Pensoft Publishers Animal Science and Zoology Ecology, Evolution, Behavior and Systematics http://dx.doi.org/10.3897/zookeys.835.32470 <jats:p>In this study, two new mitochondrial genomes (mitogenomes) of<jats:italic>Mesonemourametafiligera</jats:italic>and<jats:italic>Mesonemouratritaenia</jats:italic>from the family Nemouridae (Insecta: Plecoptera) were sequenced. The<jats:italic>Mesonemourametafiligera</jats:italic>mitogenome was a 15,739 bp circular DNA molecule, which was smaller than that of<jats:italic>M.tritaenia</jats:italic>(15,778 bp) due to differences in the size of the A+T-rich region. Results show that gene content, gene arrangement, base composition, and codon usage were highly conserved in two species. Ka/Ks ratios analyses of protein-coding genes revealed that the highest and lowest rates were found in ND6 and COI and that all these genes were evolving under purifying selection. All tRNA genes in nemourid mitogenomes had a typical cloverleaf secondary structure, except for tRNA<jats:sup>Ser(AGN)</jats:sup>which appeared to lack the dihydrouridine arm. The multiple alignments of nemourid lrRNA and srRNA genes showed that sequences of three species were highly conserved. All the A+T-rich region included tandem repeats regions and stem-loop structures. The phylogenetic analyses using Bayesian inference (BI) and maximum likelihood methods (ML) generated identical results. Amphinemurinae and Nemourinae were sister-groups and the family Nemouridae was placed as sister to Capniidae and Taeniopterygidae.</jats:p> Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea ZooKeys
spellingShingle Cao, Jin–Jun, Wang, Ying, Huang, Yao–Rui, Li, Wei–Hai, ZooKeys, Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea, Animal Science and Zoology, Ecology, Evolution, Behavior and Systematics
title Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea
title_full Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea
title_fullStr Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea
title_full_unstemmed Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea
title_short Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea
title_sort mitochondrial genomes of the stoneflies mesonemoura metafiligera and mesonemoura tritaenia (plecoptera, nemouridae), with a phylogenetic analysis of nemouroidea
title_unstemmed Mitochondrial genomes of the stoneflies Mesonemoura metafiligera and Mesonemoura tritaenia (Plecoptera, Nemouridae), with a phylogenetic analysis of Nemouroidea
topic Animal Science and Zoology, Ecology, Evolution, Behavior and Systematics
url http://dx.doi.org/10.3897/zookeys.835.32470