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Comparison of microRNAs in adipose and muscle tissue from seven indigenous Chinese breeds and Yorkshire pigs
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| Zeitschriftentitel: | Animal Genetics |
|---|---|
| Personen und Körperschaften: | , , , , , , , , , , , , , , , , |
| In: | Animal Genetics, 50, 2019, 5, S. 439-448 |
| Format: | E-Article |
| Sprache: | Englisch |
| veröffentlicht: |
Wiley
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| Schlagwörter: |
| author_facet |
Liang, Y. Wang, Y. Ma, L. Zhong, Z. Yang, X. Tao, X. Chen, X. He, Z. Yang, Y. Zeng, K. Kang, R. Gong, J. Ying, S. Lei, Y. Pang, J. Lv, X. Gu, Y. Liang, Y. Wang, Y. Ma, L. Zhong, Z. Yang, X. Tao, X. Chen, X. He, Z. Yang, Y. Zeng, K. Kang, R. Gong, J. Ying, S. Lei, Y. Pang, J. Lv, X. Gu, Y. |
|---|---|
| author |
Liang, Y. Wang, Y. Ma, L. Zhong, Z. Yang, X. Tao, X. Chen, X. He, Z. Yang, Y. Zeng, K. Kang, R. Gong, J. Ying, S. Lei, Y. Pang, J. Lv, X. Gu, Y. |
| spellingShingle |
Liang, Y. Wang, Y. Ma, L. Zhong, Z. Yang, X. Tao, X. Chen, X. He, Z. Yang, Y. Zeng, K. Kang, R. Gong, J. Ying, S. Lei, Y. Pang, J. Lv, X. Gu, Y. Animal Genetics Comparison of microRNAs in adipose and muscle tissue from seven indigenous Chinese breeds and Yorkshire pigs Genetics Animal Science and Zoology General Medicine |
| author_sort |
liang, y. |
| spelling |
Liang, Y. Wang, Y. Ma, L. Zhong, Z. Yang, X. Tao, X. Chen, X. He, Z. Yang, Y. Zeng, K. Kang, R. Gong, J. Ying, S. Lei, Y. Pang, J. Lv, X. Gu, Y. 0268-9146 1365-2052 Wiley Genetics Animal Science and Zoology General Medicine http://dx.doi.org/10.1111/age.12826 <jats:title>Summary</jats:title><jats:p>Elucidation of the pig micro<jats:styled-content style="fixed-case">RNA</jats:styled-content>ome is essential for interpreting functional elements of the genome and understanding the genetic architecture of complex traits. Here, we extracted small <jats:styled-content style="fixed-case">RNA</jats:styled-content>s from skeletal muscle and adipose tissue, and we compared their expression levels between one Western breed (Yorkshire) and seven indigenous Chinese breeds. We detected the expression of 172 known porcine micro<jats:styled-content style="fixed-case">RNA</jats:styled-content>s (mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s) and 181 novel mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s. Differential expression analysis found 92 and 12 differentially expressed mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s in adipose and muscle tissue respectively. We found that different Chinese breeds shared common directional mi<jats:styled-content style="fixed-case">RNA</jats:styled-content> expression changes compared to Yorkshire pigs. Some mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s differentially expressed across multiple Chinese breeds, including ssc‐miR‐129‐5p, ssc‐miR‐30 and ssc‐miR‐150, are involved in adipose tissue function. Functional enrichment analysis revealed that the target genes of the differentially expressed mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s are associated mainly with signaling pathways rather than metabolic and biosynthetic processes. The mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>–target gene and mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>–phenotypic traits networks identified many hub mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s that regulate a large number of target genes or phenotypic traits. Specifically, we found that intramuscular fat content is regulated by the greatest number of mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s in muscle tissue. This study provides valuable new candidate mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s that will aid in the improvement of meat quality and production.</jats:p> Comparison of micro<scp>RNA</scp>s in adipose and muscle tissue from seven indigenous Chinese breeds and Yorkshire pigs Animal Genetics |
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| title |
Comparison of microRNAs in adipose and muscle tissue from seven indigenous Chinese breeds and Yorkshire pigs |
| title_unstemmed |
Comparison of microRNAs in adipose and muscle tissue from seven indigenous Chinese breeds and Yorkshire pigs |
| title_full |
Comparison of microRNAs in adipose and muscle tissue from seven indigenous Chinese breeds and Yorkshire pigs |
| title_fullStr |
Comparison of microRNAs in adipose and muscle tissue from seven indigenous Chinese breeds and Yorkshire pigs |
| title_full_unstemmed |
Comparison of microRNAs in adipose and muscle tissue from seven indigenous Chinese breeds and Yorkshire pigs |
| title_short |
Comparison of microRNAs in adipose and muscle tissue from seven indigenous Chinese breeds and Yorkshire pigs |
| title_sort |
comparison of micro<scp>rna</scp>s in adipose and muscle tissue from seven indigenous chinese breeds and yorkshire pigs |
| topic |
Genetics Animal Science and Zoology General Medicine |
| url |
http://dx.doi.org/10.1111/age.12826 |
| publishDate |
2019 |
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439-448 |
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<jats:title>Summary</jats:title><jats:p>Elucidation of the pig micro<jats:styled-content style="fixed-case">RNA</jats:styled-content>ome is essential for interpreting functional elements of the genome and understanding the genetic architecture of complex traits. Here, we extracted small <jats:styled-content style="fixed-case">RNA</jats:styled-content>s from skeletal muscle and adipose tissue, and we compared their expression levels between one Western breed (Yorkshire) and seven indigenous Chinese breeds. We detected the expression of 172 known porcine micro<jats:styled-content style="fixed-case">RNA</jats:styled-content>s (mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s) and 181 novel mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s. Differential expression analysis found 92 and 12 differentially expressed mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s in adipose and muscle tissue respectively. We found that different Chinese breeds shared common directional mi<jats:styled-content style="fixed-case">RNA</jats:styled-content> expression changes compared to Yorkshire pigs. Some mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s differentially expressed across multiple Chinese breeds, including ssc‐miR‐129‐5p, ssc‐miR‐30 and ssc‐miR‐150, are involved in adipose tissue function. Functional enrichment analysis revealed that the target genes of the differentially expressed mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s are associated mainly with signaling pathways rather than metabolic and biosynthetic processes. The mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>–target gene and mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>–phenotypic traits networks identified many hub mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s that regulate a large number of target genes or phenotypic traits. Specifically, we found that intramuscular fat content is regulated by the greatest number of mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s in muscle tissue. This study provides valuable new candidate mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s that will aid in the improvement of meat quality and production.</jats:p> |
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| author | Liang, Y., Wang, Y., Ma, L., Zhong, Z., Yang, X., Tao, X., Chen, X., He, Z., Yang, Y., Zeng, K., Kang, R., Gong, J., Ying, S., Lei, Y., Pang, J., Lv, X., Gu, Y. |
| author_facet | Liang, Y., Wang, Y., Ma, L., Zhong, Z., Yang, X., Tao, X., Chen, X., He, Z., Yang, Y., Zeng, K., Kang, R., Gong, J., Ying, S., Lei, Y., Pang, J., Lv, X., Gu, Y., Liang, Y., Wang, Y., Ma, L., Zhong, Z., Yang, X., Tao, X., Chen, X., He, Z., Yang, Y., Zeng, K., Kang, R., Gong, J., Ying, S., Lei, Y., Pang, J., Lv, X., Gu, Y. |
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| description | <jats:title>Summary</jats:title><jats:p>Elucidation of the pig micro<jats:styled-content style="fixed-case">RNA</jats:styled-content>ome is essential for interpreting functional elements of the genome and understanding the genetic architecture of complex traits. Here, we extracted small <jats:styled-content style="fixed-case">RNA</jats:styled-content>s from skeletal muscle and adipose tissue, and we compared their expression levels between one Western breed (Yorkshire) and seven indigenous Chinese breeds. We detected the expression of 172 known porcine micro<jats:styled-content style="fixed-case">RNA</jats:styled-content>s (mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s) and 181 novel mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s. Differential expression analysis found 92 and 12 differentially expressed mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s in adipose and muscle tissue respectively. We found that different Chinese breeds shared common directional mi<jats:styled-content style="fixed-case">RNA</jats:styled-content> expression changes compared to Yorkshire pigs. Some mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s differentially expressed across multiple Chinese breeds, including ssc‐miR‐129‐5p, ssc‐miR‐30 and ssc‐miR‐150, are involved in adipose tissue function. Functional enrichment analysis revealed that the target genes of the differentially expressed mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s are associated mainly with signaling pathways rather than metabolic and biosynthetic processes. The mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>–target gene and mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>–phenotypic traits networks identified many hub mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s that regulate a large number of target genes or phenotypic traits. Specifically, we found that intramuscular fat content is regulated by the greatest number of mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s in muscle tissue. This study provides valuable new candidate mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s that will aid in the improvement of meat quality and production.</jats:p> |
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| spelling | Liang, Y. Wang, Y. Ma, L. Zhong, Z. Yang, X. Tao, X. Chen, X. He, Z. Yang, Y. Zeng, K. Kang, R. Gong, J. Ying, S. Lei, Y. Pang, J. Lv, X. Gu, Y. 0268-9146 1365-2052 Wiley Genetics Animal Science and Zoology General Medicine http://dx.doi.org/10.1111/age.12826 <jats:title>Summary</jats:title><jats:p>Elucidation of the pig micro<jats:styled-content style="fixed-case">RNA</jats:styled-content>ome is essential for interpreting functional elements of the genome and understanding the genetic architecture of complex traits. Here, we extracted small <jats:styled-content style="fixed-case">RNA</jats:styled-content>s from skeletal muscle and adipose tissue, and we compared their expression levels between one Western breed (Yorkshire) and seven indigenous Chinese breeds. We detected the expression of 172 known porcine micro<jats:styled-content style="fixed-case">RNA</jats:styled-content>s (mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s) and 181 novel mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s. Differential expression analysis found 92 and 12 differentially expressed mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s in adipose and muscle tissue respectively. We found that different Chinese breeds shared common directional mi<jats:styled-content style="fixed-case">RNA</jats:styled-content> expression changes compared to Yorkshire pigs. Some mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s differentially expressed across multiple Chinese breeds, including ssc‐miR‐129‐5p, ssc‐miR‐30 and ssc‐miR‐150, are involved in adipose tissue function. Functional enrichment analysis revealed that the target genes of the differentially expressed mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s are associated mainly with signaling pathways rather than metabolic and biosynthetic processes. The mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>–target gene and mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>–phenotypic traits networks identified many hub mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s that regulate a large number of target genes or phenotypic traits. Specifically, we found that intramuscular fat content is regulated by the greatest number of mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s in muscle tissue. This study provides valuable new candidate mi<jats:styled-content style="fixed-case">RNA</jats:styled-content>s that will aid in the improvement of meat quality and production.</jats:p> Comparison of micro<scp>RNA</scp>s in adipose and muscle tissue from seven indigenous Chinese breeds and Yorkshire pigs Animal Genetics |
| spellingShingle | Liang, Y., Wang, Y., Ma, L., Zhong, Z., Yang, X., Tao, X., Chen, X., He, Z., Yang, Y., Zeng, K., Kang, R., Gong, J., Ying, S., Lei, Y., Pang, J., Lv, X., Gu, Y., Animal Genetics, Comparison of microRNAs in adipose and muscle tissue from seven indigenous Chinese breeds and Yorkshire pigs, Genetics, Animal Science and Zoology, General Medicine |
| title | Comparison of microRNAs in adipose and muscle tissue from seven indigenous Chinese breeds and Yorkshire pigs |
| title_full | Comparison of microRNAs in adipose and muscle tissue from seven indigenous Chinese breeds and Yorkshire pigs |
| title_fullStr | Comparison of microRNAs in adipose and muscle tissue from seven indigenous Chinese breeds and Yorkshire pigs |
| title_full_unstemmed | Comparison of microRNAs in adipose and muscle tissue from seven indigenous Chinese breeds and Yorkshire pigs |
| title_short | Comparison of microRNAs in adipose and muscle tissue from seven indigenous Chinese breeds and Yorkshire pigs |
| title_sort | comparison of micro<scp>rna</scp>s in adipose and muscle tissue from seven indigenous chinese breeds and yorkshire pigs |
| title_unstemmed | Comparison of microRNAs in adipose and muscle tissue from seven indigenous Chinese breeds and Yorkshire pigs |
| topic | Genetics, Animal Science and Zoology, General Medicine |
| url | http://dx.doi.org/10.1111/age.12826 |