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The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers
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| Zeitschriftentitel: | The Plant Cell |
|---|---|
| Personen und Körperschaften: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
| In: | The Plant Cell, 25, 2013, 8, S. 2813-2830 |
| Format: | E-Article |
| Sprache: | Englisch |
| veröffentlicht: |
Oxford University Press (OUP)
|
| Schlagwörter: |
| author_facet |
Cheng, Shifeng van den Bergh, Erik Zeng, Peng Zhong, Xiao Xu, Jiajia Liu, Xin Hofberger, Johannes de Bruijn, Suzanne Bhide, Amey S. Kuelahoglu, Canan Bian, Chao Chen, Jing Fan, Guangyi Kaufmann, Kerstin Hall, Jocelyn C. Becker, Annette Bräutigam, Andrea Weber, Andreas P.M. Shi, Chengcheng Zheng, Zhijun Li, Wujiao Lv, Mingju Tao, Yimin Wang, Junyi Zou, Hongfeng Quan, Zhiwu Hibberd, Julian M. Zhang, Gengyun Zhu, Xin-Guang Xu, Xun Schranz, M. Eric Cheng, Shifeng van den Bergh, Erik Zeng, Peng Zhong, Xiao Xu, Jiajia Liu, Xin Hofberger, Johannes de Bruijn, Suzanne Bhide, Amey S. Kuelahoglu, Canan Bian, Chao Chen, Jing Fan, Guangyi Kaufmann, Kerstin Hall, Jocelyn C. Becker, Annette Bräutigam, Andrea Weber, Andreas P.M. Shi, Chengcheng Zheng, Zhijun Li, Wujiao Lv, Mingju Tao, Yimin Wang, Junyi Zou, Hongfeng Quan, Zhiwu Hibberd, Julian M. Zhang, Gengyun Zhu, Xin-Guang Xu, Xun Schranz, M. Eric |
|---|---|
| author |
Cheng, Shifeng van den Bergh, Erik Zeng, Peng Zhong, Xiao Xu, Jiajia Liu, Xin Hofberger, Johannes de Bruijn, Suzanne Bhide, Amey S. Kuelahoglu, Canan Bian, Chao Chen, Jing Fan, Guangyi Kaufmann, Kerstin Hall, Jocelyn C. Becker, Annette Bräutigam, Andrea Weber, Andreas P.M. Shi, Chengcheng Zheng, Zhijun Li, Wujiao Lv, Mingju Tao, Yimin Wang, Junyi Zou, Hongfeng Quan, Zhiwu Hibberd, Julian M. Zhang, Gengyun Zhu, Xin-Guang Xu, Xun Schranz, M. Eric |
| spellingShingle |
Cheng, Shifeng van den Bergh, Erik Zeng, Peng Zhong, Xiao Xu, Jiajia Liu, Xin Hofberger, Johannes de Bruijn, Suzanne Bhide, Amey S. Kuelahoglu, Canan Bian, Chao Chen, Jing Fan, Guangyi Kaufmann, Kerstin Hall, Jocelyn C. Becker, Annette Bräutigam, Andrea Weber, Andreas P.M. Shi, Chengcheng Zheng, Zhijun Li, Wujiao Lv, Mingju Tao, Yimin Wang, Junyi Zou, Hongfeng Quan, Zhiwu Hibberd, Julian M. Zhang, Gengyun Zhu, Xin-Guang Xu, Xun Schranz, M. Eric The Plant Cell The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers Cell Biology Plant Science |
| author_sort |
cheng, shifeng |
| spelling |
Cheng, Shifeng van den Bergh, Erik Zeng, Peng Zhong, Xiao Xu, Jiajia Liu, Xin Hofberger, Johannes de Bruijn, Suzanne Bhide, Amey S. Kuelahoglu, Canan Bian, Chao Chen, Jing Fan, Guangyi Kaufmann, Kerstin Hall, Jocelyn C. Becker, Annette Bräutigam, Andrea Weber, Andreas P.M. Shi, Chengcheng Zheng, Zhijun Li, Wujiao Lv, Mingju Tao, Yimin Wang, Junyi Zou, Hongfeng Quan, Zhiwu Hibberd, Julian M. Zhang, Gengyun Zhu, Xin-Guang Xu, Xun Schranz, M. Eric 1532-298X 1040-4651 Oxford University Press (OUP) Cell Biology Plant Science http://dx.doi.org/10.1105/tpc.113.113480 <jats:title>Abstract</jats:title> <jats:p>The Brassicaceae, including Arabidopsis thaliana and Brassica crops, is unmatched among plants in its wealth of genomic and functional molecular data and has long served as a model for understanding gene, genome, and trait evolution. However, genome information from a phylogenetic outgroup that is essential for inferring directionality of evolutionary change has been lacking. We therefore sequenced the genome of the spider flower (Tarenaya hassleriana) from the Brassicaceae sister family, the Cleomaceae. By comparative analysis of the two lineages, we show that genome evolution following ancient polyploidy and gene duplication events affect reproductively important traits. We found an ancient genome triplication in Tarenaya (Th-α) that is independent of the Brassicaceae-specific duplication (At-α) and nested Brassica (Br-α) triplication. To showcase the potential of sister lineage genome analysis, we investigated the state of floral developmental genes and show Brassica retains twice as many floral MADS (for MINICHROMOSOME MAINTENANCE1, AGAMOUS, DEFICIENS and SERUM RESPONSE FACTOR) genes as Tarenaya that likely contribute to morphological diversity in Brassica. We also performed synteny analysis of gene families that confer self-incompatibility in Brassicaceae and found that the critical SERINE RECEPTOR KINASE receptor gene is derived from a lineage-specific tandem duplication. The T. hassleriana genome will facilitate future research toward elucidating the evolutionary history of Brassicaceae genomes.</jats:p> The <i>Tarenaya hassleriana</i> Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers The Plant Cell |
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| title |
The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers |
| title_unstemmed |
The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers |
| title_full |
The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers |
| title_fullStr |
The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers |
| title_full_unstemmed |
The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers |
| title_short |
The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers |
| title_sort |
the <i>tarenaya hassleriana</i> genome provides insight into reproductive trait and genome evolution of crucifers |
| topic |
Cell Biology Plant Science |
| url |
http://dx.doi.org/10.1105/tpc.113.113480 |
| publishDate |
2013 |
| physical |
2813-2830 |
| description |
<jats:title>Abstract</jats:title>
<jats:p>The Brassicaceae, including Arabidopsis thaliana and Brassica crops, is unmatched among plants in its wealth of genomic and functional molecular data and has long served as a model for understanding gene, genome, and trait evolution. However, genome information from a phylogenetic outgroup that is essential for inferring directionality of evolutionary change has been lacking. We therefore sequenced the genome of the spider flower (Tarenaya hassleriana) from the Brassicaceae sister family, the Cleomaceae. By comparative analysis of the two lineages, we show that genome evolution following ancient polyploidy and gene duplication events affect reproductively important traits. We found an ancient genome triplication in Tarenaya (Th-α) that is independent of the Brassicaceae-specific duplication (At-α) and nested Brassica (Br-α) triplication. To showcase the potential of sister lineage genome analysis, we investigated the state of floral developmental genes and show Brassica retains twice as many floral MADS (for MINICHROMOSOME MAINTENANCE1, AGAMOUS, DEFICIENS and SERUM RESPONSE FACTOR) genes as Tarenaya that likely contribute to morphological diversity in Brassica. We also performed synteny analysis of gene families that confer self-incompatibility in Brassicaceae and found that the critical SERINE RECEPTOR KINASE receptor gene is derived from a lineage-specific tandem duplication. The T. hassleriana genome will facilitate future research toward elucidating the evolutionary history of Brassicaceae genomes.</jats:p> |
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| author | Cheng, Shifeng, van den Bergh, Erik, Zeng, Peng, Zhong, Xiao, Xu, Jiajia, Liu, Xin, Hofberger, Johannes, de Bruijn, Suzanne, Bhide, Amey S., Kuelahoglu, Canan, Bian, Chao, Chen, Jing, Fan, Guangyi, Kaufmann, Kerstin, Hall, Jocelyn C., Becker, Annette, Bräutigam, Andrea, Weber, Andreas P.M., Shi, Chengcheng, Zheng, Zhijun, Li, Wujiao, Lv, Mingju, Tao, Yimin, Wang, Junyi, Zou, Hongfeng, Quan, Zhiwu, Hibberd, Julian M., Zhang, Gengyun, Zhu, Xin-Guang, Xu, Xun, Schranz, M. Eric |
| author_facet | Cheng, Shifeng, van den Bergh, Erik, Zeng, Peng, Zhong, Xiao, Xu, Jiajia, Liu, Xin, Hofberger, Johannes, de Bruijn, Suzanne, Bhide, Amey S., Kuelahoglu, Canan, Bian, Chao, Chen, Jing, Fan, Guangyi, Kaufmann, Kerstin, Hall, Jocelyn C., Becker, Annette, Bräutigam, Andrea, Weber, Andreas P.M., Shi, Chengcheng, Zheng, Zhijun, Li, Wujiao, Lv, Mingju, Tao, Yimin, Wang, Junyi, Zou, Hongfeng, Quan, Zhiwu, Hibberd, Julian M., Zhang, Gengyun, Zhu, Xin-Guang, Xu, Xun, Schranz, M. Eric, Cheng, Shifeng, van den Bergh, Erik, Zeng, Peng, Zhong, Xiao, Xu, Jiajia, Liu, Xin, Hofberger, Johannes, de Bruijn, Suzanne, Bhide, Amey S., Kuelahoglu, Canan, Bian, Chao, Chen, Jing, Fan, Guangyi, Kaufmann, Kerstin, Hall, Jocelyn C., Becker, Annette, Bräutigam, Andrea, Weber, Andreas P.M., Shi, Chengcheng, Zheng, Zhijun, Li, Wujiao, Lv, Mingju, Tao, Yimin, Wang, Junyi, Zou, Hongfeng, Quan, Zhiwu, Hibberd, Julian M., Zhang, Gengyun, Zhu, Xin-Guang, Xu, Xun, Schranz, M. Eric |
| author_sort | cheng, shifeng |
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| description | <jats:title>Abstract</jats:title> <jats:p>The Brassicaceae, including Arabidopsis thaliana and Brassica crops, is unmatched among plants in its wealth of genomic and functional molecular data and has long served as a model for understanding gene, genome, and trait evolution. However, genome information from a phylogenetic outgroup that is essential for inferring directionality of evolutionary change has been lacking. We therefore sequenced the genome of the spider flower (Tarenaya hassleriana) from the Brassicaceae sister family, the Cleomaceae. By comparative analysis of the two lineages, we show that genome evolution following ancient polyploidy and gene duplication events affect reproductively important traits. We found an ancient genome triplication in Tarenaya (Th-α) that is independent of the Brassicaceae-specific duplication (At-α) and nested Brassica (Br-α) triplication. To showcase the potential of sister lineage genome analysis, we investigated the state of floral developmental genes and show Brassica retains twice as many floral MADS (for MINICHROMOSOME MAINTENANCE1, AGAMOUS, DEFICIENS and SERUM RESPONSE FACTOR) genes as Tarenaya that likely contribute to morphological diversity in Brassica. We also performed synteny analysis of gene families that confer self-incompatibility in Brassicaceae and found that the critical SERINE RECEPTOR KINASE receptor gene is derived from a lineage-specific tandem duplication. The T. hassleriana genome will facilitate future research toward elucidating the evolutionary history of Brassicaceae genomes.</jats:p> |
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| spelling | Cheng, Shifeng van den Bergh, Erik Zeng, Peng Zhong, Xiao Xu, Jiajia Liu, Xin Hofberger, Johannes de Bruijn, Suzanne Bhide, Amey S. Kuelahoglu, Canan Bian, Chao Chen, Jing Fan, Guangyi Kaufmann, Kerstin Hall, Jocelyn C. Becker, Annette Bräutigam, Andrea Weber, Andreas P.M. Shi, Chengcheng Zheng, Zhijun Li, Wujiao Lv, Mingju Tao, Yimin Wang, Junyi Zou, Hongfeng Quan, Zhiwu Hibberd, Julian M. Zhang, Gengyun Zhu, Xin-Guang Xu, Xun Schranz, M. Eric 1532-298X 1040-4651 Oxford University Press (OUP) Cell Biology Plant Science http://dx.doi.org/10.1105/tpc.113.113480 <jats:title>Abstract</jats:title> <jats:p>The Brassicaceae, including Arabidopsis thaliana and Brassica crops, is unmatched among plants in its wealth of genomic and functional molecular data and has long served as a model for understanding gene, genome, and trait evolution. However, genome information from a phylogenetic outgroup that is essential for inferring directionality of evolutionary change has been lacking. We therefore sequenced the genome of the spider flower (Tarenaya hassleriana) from the Brassicaceae sister family, the Cleomaceae. By comparative analysis of the two lineages, we show that genome evolution following ancient polyploidy and gene duplication events affect reproductively important traits. We found an ancient genome triplication in Tarenaya (Th-α) that is independent of the Brassicaceae-specific duplication (At-α) and nested Brassica (Br-α) triplication. To showcase the potential of sister lineage genome analysis, we investigated the state of floral developmental genes and show Brassica retains twice as many floral MADS (for MINICHROMOSOME MAINTENANCE1, AGAMOUS, DEFICIENS and SERUM RESPONSE FACTOR) genes as Tarenaya that likely contribute to morphological diversity in Brassica. We also performed synteny analysis of gene families that confer self-incompatibility in Brassicaceae and found that the critical SERINE RECEPTOR KINASE receptor gene is derived from a lineage-specific tandem duplication. The T. hassleriana genome will facilitate future research toward elucidating the evolutionary history of Brassicaceae genomes.</jats:p> The <i>Tarenaya hassleriana</i> Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers The Plant Cell |
| spellingShingle | Cheng, Shifeng, van den Bergh, Erik, Zeng, Peng, Zhong, Xiao, Xu, Jiajia, Liu, Xin, Hofberger, Johannes, de Bruijn, Suzanne, Bhide, Amey S., Kuelahoglu, Canan, Bian, Chao, Chen, Jing, Fan, Guangyi, Kaufmann, Kerstin, Hall, Jocelyn C., Becker, Annette, Bräutigam, Andrea, Weber, Andreas P.M., Shi, Chengcheng, Zheng, Zhijun, Li, Wujiao, Lv, Mingju, Tao, Yimin, Wang, Junyi, Zou, Hongfeng, Quan, Zhiwu, Hibberd, Julian M., Zhang, Gengyun, Zhu, Xin-Guang, Xu, Xun, Schranz, M. Eric, The Plant Cell, The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers, Cell Biology, Plant Science |
| title | The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers |
| title_full | The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers |
| title_fullStr | The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers |
| title_full_unstemmed | The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers |
| title_short | The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers |
| title_sort | the <i>tarenaya hassleriana</i> genome provides insight into reproductive trait and genome evolution of crucifers |
| title_unstemmed | The Tarenaya hassleriana Genome Provides Insight into Reproductive Trait and Genome Evolution of Crucifers |
| topic | Cell Biology, Plant Science |
| url | http://dx.doi.org/10.1105/tpc.113.113480 |