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Using Stata with PHASE and Haploview: Commands for Importing and Exporting Data
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| Zeitschriftentitel: | The Stata Journal: Promoting communications on statistics and Stata |
|---|---|
| Personen und Körperschaften: | |
| In: | The Stata Journal: Promoting communications on statistics and Stata, 10, 2010, 3, S. 359-368 |
| Format: | E-Article |
| Sprache: | Englisch |
| veröffentlicht: |
SAGE Publications
|
| Schlagwörter: |
| author_facet |
Huber, J. Charles Huber, J. Charles |
|---|---|
| author |
Huber, J. Charles |
| spellingShingle |
Huber, J. Charles The Stata Journal: Promoting communications on statistics and Stata Using Stata with PHASE and Haploview: Commands for Importing and Exporting Data Mathematics (miscellaneous) |
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huber, j. charles |
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Huber, J. Charles 1536-867X 1536-8734 SAGE Publications Mathematics (miscellaneous) http://dx.doi.org/10.1177/1536867x1001000304 <jats:p> Modern genetics studies require the use of many specialty software programs for various aspects of the statistical analysis. PHASE is a program often used to reconstruct haplotypes from genotype data, and Haploview is a program often used to visualize and analyze single nucleotide polymorphism data. Three new commands are described for performing these three steps: 1) exporting genotype data stored in Stata to PHASE, 2) importing the resulting inferred haplotypes back into Stata, and 3) exporting the haplotype/single nucleotide polymorphism data from Stata to Haploview. </jats:p> Using Stata with PHASE and Haploview: Commands for Importing and Exporting Data The Stata Journal: Promoting communications on statistics and Stata |
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The Stata Journal: Promoting communications on statistics and Stata |
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| title |
Using Stata with PHASE and Haploview: Commands for Importing and Exporting Data |
| title_unstemmed |
Using Stata with PHASE and Haploview: Commands for Importing and Exporting Data |
| title_full |
Using Stata with PHASE and Haploview: Commands for Importing and Exporting Data |
| title_fullStr |
Using Stata with PHASE and Haploview: Commands for Importing and Exporting Data |
| title_full_unstemmed |
Using Stata with PHASE and Haploview: Commands for Importing and Exporting Data |
| title_short |
Using Stata with PHASE and Haploview: Commands for Importing and Exporting Data |
| title_sort |
using stata with phase and haploview: commands for importing and exporting data |
| topic |
Mathematics (miscellaneous) |
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http://dx.doi.org/10.1177/1536867x1001000304 |
| publishDate |
2010 |
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359-368 |
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<jats:p> Modern genetics studies require the use of many specialty software programs for various aspects of the statistical analysis. PHASE is a program often used to reconstruct haplotypes from genotype data, and Haploview is a program often used to visualize and analyze single nucleotide polymorphism data. Three new commands are described for performing these three steps: 1) exporting genotype data stored in Stata to PHASE, 2) importing the resulting inferred haplotypes back into Stata, and 3) exporting the haplotype/single nucleotide polymorphism data from Stata to Haploview. </jats:p> |
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| description | <jats:p> Modern genetics studies require the use of many specialty software programs for various aspects of the statistical analysis. PHASE is a program often used to reconstruct haplotypes from genotype data, and Haploview is a program often used to visualize and analyze single nucleotide polymorphism data. Three new commands are described for performing these three steps: 1) exporting genotype data stored in Stata to PHASE, 2) importing the resulting inferred haplotypes back into Stata, and 3) exporting the haplotype/single nucleotide polymorphism data from Stata to Haploview. </jats:p> |
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| spelling | Huber, J. Charles 1536-867X 1536-8734 SAGE Publications Mathematics (miscellaneous) http://dx.doi.org/10.1177/1536867x1001000304 <jats:p> Modern genetics studies require the use of many specialty software programs for various aspects of the statistical analysis. PHASE is a program often used to reconstruct haplotypes from genotype data, and Haploview is a program often used to visualize and analyze single nucleotide polymorphism data. Three new commands are described for performing these three steps: 1) exporting genotype data stored in Stata to PHASE, 2) importing the resulting inferred haplotypes back into Stata, and 3) exporting the haplotype/single nucleotide polymorphism data from Stata to Haploview. </jats:p> Using Stata with PHASE and Haploview: Commands for Importing and Exporting Data The Stata Journal: Promoting communications on statistics and Stata |
| spellingShingle | Huber, J. Charles, The Stata Journal: Promoting communications on statistics and Stata, Using Stata with PHASE and Haploview: Commands for Importing and Exporting Data, Mathematics (miscellaneous) |
| title | Using Stata with PHASE and Haploview: Commands for Importing and Exporting Data |
| title_full | Using Stata with PHASE and Haploview: Commands for Importing and Exporting Data |
| title_fullStr | Using Stata with PHASE and Haploview: Commands for Importing and Exporting Data |
| title_full_unstemmed | Using Stata with PHASE and Haploview: Commands for Importing and Exporting Data |
| title_short | Using Stata with PHASE and Haploview: Commands for Importing and Exporting Data |
| title_sort | using stata with phase and haploview: commands for importing and exporting data |
| title_unstemmed | Using Stata with PHASE and Haploview: Commands for Importing and Exporting Data |
| topic | Mathematics (miscellaneous) |
| url | http://dx.doi.org/10.1177/1536867x1001000304 |