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Sequencing, characterization and phylogenomics of the complete mitochondrial genome of Dactylogyrus lamellatus (Monogenea: Dactylogyridae)
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| Zeitschriftentitel: | Journal of Helminthology |
|---|---|
| Personen und Körperschaften: | , , , , , , , , |
| In: | Journal of Helminthology, 92, 2018, 4, S. 455-466 |
| Format: | E-Article |
| Sprache: | Englisch |
| veröffentlicht: |
Cambridge University Press (CUP)
|
| Schlagwörter: |
| author_facet |
Zhang, D. Zou, H. Wu, S.G. Li, M. Jakovlić, I. Zhang, J. Chen, R. Wang, G.T. Li, W.X. Zhang, D. Zou, H. Wu, S.G. Li, M. Jakovlić, I. Zhang, J. Chen, R. Wang, G.T. Li, W.X. |
|---|---|
| author |
Zhang, D. Zou, H. Wu, S.G. Li, M. Jakovlić, I. Zhang, J. Chen, R. Wang, G.T. Li, W.X. |
| spellingShingle |
Zhang, D. Zou, H. Wu, S.G. Li, M. Jakovlić, I. Zhang, J. Chen, R. Wang, G.T. Li, W.X. Journal of Helminthology Sequencing, characterization and phylogenomics of the complete mitochondrial genome of Dactylogyrus lamellatus (Monogenea: Dactylogyridae) Animal Science and Zoology General Medicine Parasitology |
| author_sort |
zhang, d. |
| spelling |
Zhang, D. Zou, H. Wu, S.G. Li, M. Jakovlić, I. Zhang, J. Chen, R. Wang, G.T. Li, W.X. 0022-149X 1475-2697 Cambridge University Press (CUP) Animal Science and Zoology General Medicine Parasitology http://dx.doi.org/10.1017/s0022149x17000578 <jats:title>Abstract</jats:title><jats:p>Despite the worldwide distribution and pathogenicity of monogenean parasites belonging to the largest helminth genus, <jats:italic>Dactylogyrus</jats:italic>, there are no complete Dactylogyrinae (subfamily) mitogenomes published to date. In order to fill this knowledge gap, we have sequenced and characterized the complete mitogenome of <jats:italic>Dactylogyrus lamellatus</jats:italic>, a common parasite on the gills of grass carp (<jats:italic>Ctenopharyngodon idella</jats:italic>). The circular mitogenome is 15,187 bp in size, containing the standard 22 tRNA genes, 2 rRNA genes, 12 protein-encoding genes and a long non-coding region (NCR). There are two highly repetitive regions in the NCR. We have used concatenated nucleotide sequences of all 36 genes to perform the phylogenetic analysis using Bayesian inference and maximum likelihood approaches. As expected, the two dactylogyrids, <jats:italic>D. lamellatus</jats:italic> (Dactylogyrinae) and <jats:italic>Tetrancistrum nebulosi</jats:italic> (Ancyrocephalinae), were closely related to each other. These two formed a sister group with Capsalidae, and this cluster finally formed a further sister group with Gyrodactylidae. Phylogenetic affinity between Dactylogyrinae and Ancyrocephalinae was further confirmed by the similarity in their gene arrangement. The sequencing of the first Dactylogyrinae, along with a more suitable selection of outgroups, has enabled us to infer a much better phylogenetic resolution than recent mitogenomic studies. However, as many lineages of the class Monogenea remain underrepresented or not represented at all, a much larger number of mitogenome sequences will have to be available in order to infer the evolutionary relationships among the monogeneans fully, and with certainty.</jats:p> Sequencing, characterization and phylogenomics of the complete mitochondrial genome of <i>Dactylogyrus lamellatus</i> (Monogenea: Dactylogyridae) Journal of Helminthology |
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10.1017/s0022149x17000578 |
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0022-149X 1475-2697 |
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| title |
Sequencing, characterization and phylogenomics of the complete mitochondrial genome of Dactylogyrus lamellatus (Monogenea: Dactylogyridae) |
| title_unstemmed |
Sequencing, characterization and phylogenomics of the complete mitochondrial genome of Dactylogyrus lamellatus (Monogenea: Dactylogyridae) |
| title_full |
Sequencing, characterization and phylogenomics of the complete mitochondrial genome of Dactylogyrus lamellatus (Monogenea: Dactylogyridae) |
| title_fullStr |
Sequencing, characterization and phylogenomics of the complete mitochondrial genome of Dactylogyrus lamellatus (Monogenea: Dactylogyridae) |
| title_full_unstemmed |
Sequencing, characterization and phylogenomics of the complete mitochondrial genome of Dactylogyrus lamellatus (Monogenea: Dactylogyridae) |
| title_short |
Sequencing, characterization and phylogenomics of the complete mitochondrial genome of Dactylogyrus lamellatus (Monogenea: Dactylogyridae) |
| title_sort |
sequencing, characterization and phylogenomics of the complete mitochondrial genome of <i>dactylogyrus lamellatus</i> (monogenea: dactylogyridae) |
| topic |
Animal Science and Zoology General Medicine Parasitology |
| url |
http://dx.doi.org/10.1017/s0022149x17000578 |
| publishDate |
2018 |
| physical |
455-466 |
| description |
<jats:title>Abstract</jats:title><jats:p>Despite the worldwide distribution and pathogenicity of monogenean parasites belonging to the largest helminth genus, <jats:italic>Dactylogyrus</jats:italic>, there are no complete Dactylogyrinae (subfamily) mitogenomes published to date. In order to fill this knowledge gap, we have sequenced and characterized the complete mitogenome of <jats:italic>Dactylogyrus lamellatus</jats:italic>, a common parasite on the gills of grass carp (<jats:italic>Ctenopharyngodon idella</jats:italic>). The circular mitogenome is 15,187 bp in size, containing the standard 22 tRNA genes, 2 rRNA genes, 12 protein-encoding genes and a long non-coding region (NCR). There are two highly repetitive regions in the NCR. We have used concatenated nucleotide sequences of all 36 genes to perform the phylogenetic analysis using Bayesian inference and maximum likelihood approaches. As expected, the two dactylogyrids, <jats:italic>D. lamellatus</jats:italic> (Dactylogyrinae) and <jats:italic>Tetrancistrum nebulosi</jats:italic> (Ancyrocephalinae), were closely related to each other. These two formed a sister group with Capsalidae, and this cluster finally formed a further sister group with Gyrodactylidae. Phylogenetic affinity between Dactylogyrinae and Ancyrocephalinae was further confirmed by the similarity in their gene arrangement. The sequencing of the first Dactylogyrinae, along with a more suitable selection of outgroups, has enabled us to infer a much better phylogenetic resolution than recent mitogenomic studies. However, as many lineages of the class Monogenea remain underrepresented or not represented at all, a much larger number of mitogenome sequences will have to be available in order to infer the evolutionary relationships among the monogeneans fully, and with certainty.</jats:p> |
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| author | Zhang, D., Zou, H., Wu, S.G., Li, M., Jakovlić, I., Zhang, J., Chen, R., Wang, G.T., Li, W.X. |
| author_facet | Zhang, D., Zou, H., Wu, S.G., Li, M., Jakovlić, I., Zhang, J., Chen, R., Wang, G.T., Li, W.X., Zhang, D., Zou, H., Wu, S.G., Li, M., Jakovlić, I., Zhang, J., Chen, R., Wang, G.T., Li, W.X. |
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| description | <jats:title>Abstract</jats:title><jats:p>Despite the worldwide distribution and pathogenicity of monogenean parasites belonging to the largest helminth genus, <jats:italic>Dactylogyrus</jats:italic>, there are no complete Dactylogyrinae (subfamily) mitogenomes published to date. In order to fill this knowledge gap, we have sequenced and characterized the complete mitogenome of <jats:italic>Dactylogyrus lamellatus</jats:italic>, a common parasite on the gills of grass carp (<jats:italic>Ctenopharyngodon idella</jats:italic>). The circular mitogenome is 15,187 bp in size, containing the standard 22 tRNA genes, 2 rRNA genes, 12 protein-encoding genes and a long non-coding region (NCR). There are two highly repetitive regions in the NCR. We have used concatenated nucleotide sequences of all 36 genes to perform the phylogenetic analysis using Bayesian inference and maximum likelihood approaches. As expected, the two dactylogyrids, <jats:italic>D. lamellatus</jats:italic> (Dactylogyrinae) and <jats:italic>Tetrancistrum nebulosi</jats:italic> (Ancyrocephalinae), were closely related to each other. These two formed a sister group with Capsalidae, and this cluster finally formed a further sister group with Gyrodactylidae. Phylogenetic affinity between Dactylogyrinae and Ancyrocephalinae was further confirmed by the similarity in their gene arrangement. The sequencing of the first Dactylogyrinae, along with a more suitable selection of outgroups, has enabled us to infer a much better phylogenetic resolution than recent mitogenomic studies. However, as many lineages of the class Monogenea remain underrepresented or not represented at all, a much larger number of mitogenome sequences will have to be available in order to infer the evolutionary relationships among the monogeneans fully, and with certainty.</jats:p> |
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| imprint | Cambridge University Press (CUP), 2018 |
| imprint_str_mv | Cambridge University Press (CUP), 2018 |
| institution | DE-Bn3, DE-Brt1, DE-D161, DE-Gla1, DE-Zi4, DE-15, DE-Pl11, DE-Rs1, DE-105, DE-14, DE-Ch1, DE-L229, DE-D275 |
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| physical | 455-466 |
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| spelling | Zhang, D. Zou, H. Wu, S.G. Li, M. Jakovlić, I. Zhang, J. Chen, R. Wang, G.T. Li, W.X. 0022-149X 1475-2697 Cambridge University Press (CUP) Animal Science and Zoology General Medicine Parasitology http://dx.doi.org/10.1017/s0022149x17000578 <jats:title>Abstract</jats:title><jats:p>Despite the worldwide distribution and pathogenicity of monogenean parasites belonging to the largest helminth genus, <jats:italic>Dactylogyrus</jats:italic>, there are no complete Dactylogyrinae (subfamily) mitogenomes published to date. In order to fill this knowledge gap, we have sequenced and characterized the complete mitogenome of <jats:italic>Dactylogyrus lamellatus</jats:italic>, a common parasite on the gills of grass carp (<jats:italic>Ctenopharyngodon idella</jats:italic>). The circular mitogenome is 15,187 bp in size, containing the standard 22 tRNA genes, 2 rRNA genes, 12 protein-encoding genes and a long non-coding region (NCR). There are two highly repetitive regions in the NCR. We have used concatenated nucleotide sequences of all 36 genes to perform the phylogenetic analysis using Bayesian inference and maximum likelihood approaches. As expected, the two dactylogyrids, <jats:italic>D. lamellatus</jats:italic> (Dactylogyrinae) and <jats:italic>Tetrancistrum nebulosi</jats:italic> (Ancyrocephalinae), were closely related to each other. These two formed a sister group with Capsalidae, and this cluster finally formed a further sister group with Gyrodactylidae. Phylogenetic affinity between Dactylogyrinae and Ancyrocephalinae was further confirmed by the similarity in their gene arrangement. The sequencing of the first Dactylogyrinae, along with a more suitable selection of outgroups, has enabled us to infer a much better phylogenetic resolution than recent mitogenomic studies. However, as many lineages of the class Monogenea remain underrepresented or not represented at all, a much larger number of mitogenome sequences will have to be available in order to infer the evolutionary relationships among the monogeneans fully, and with certainty.</jats:p> Sequencing, characterization and phylogenomics of the complete mitochondrial genome of <i>Dactylogyrus lamellatus</i> (Monogenea: Dactylogyridae) Journal of Helminthology |
| spellingShingle | Zhang, D., Zou, H., Wu, S.G., Li, M., Jakovlić, I., Zhang, J., Chen, R., Wang, G.T., Li, W.X., Journal of Helminthology, Sequencing, characterization and phylogenomics of the complete mitochondrial genome of Dactylogyrus lamellatus (Monogenea: Dactylogyridae), Animal Science and Zoology, General Medicine, Parasitology |
| title | Sequencing, characterization and phylogenomics of the complete mitochondrial genome of Dactylogyrus lamellatus (Monogenea: Dactylogyridae) |
| title_full | Sequencing, characterization and phylogenomics of the complete mitochondrial genome of Dactylogyrus lamellatus (Monogenea: Dactylogyridae) |
| title_fullStr | Sequencing, characterization and phylogenomics of the complete mitochondrial genome of Dactylogyrus lamellatus (Monogenea: Dactylogyridae) |
| title_full_unstemmed | Sequencing, characterization and phylogenomics of the complete mitochondrial genome of Dactylogyrus lamellatus (Monogenea: Dactylogyridae) |
| title_short | Sequencing, characterization and phylogenomics of the complete mitochondrial genome of Dactylogyrus lamellatus (Monogenea: Dactylogyridae) |
| title_sort | sequencing, characterization and phylogenomics of the complete mitochondrial genome of <i>dactylogyrus lamellatus</i> (monogenea: dactylogyridae) |
| title_unstemmed | Sequencing, characterization and phylogenomics of the complete mitochondrial genome of Dactylogyrus lamellatus (Monogenea: Dactylogyridae) |
| topic | Animal Science and Zoology, General Medicine, Parasitology |
| url | http://dx.doi.org/10.1017/s0022149x17000578 |