Eintrag weiter verarbeiten
Shewanella sediminis sp. nov., a novel Na+-requiring and hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading bacterium from marine sediment
Gespeichert in:
| Zeitschriftentitel: | International Journal of Systematic and Evolutionary Microbiology |
|---|---|
| Personen und Körperschaften: | , , , , |
| In: | International Journal of Systematic and Evolutionary Microbiology, 55, 2005, 4, S. 1511-1520 |
| Format: | E-Article |
| Sprache: | Englisch |
| veröffentlicht: |
Microbiology Society
|
| Schlagwörter: |
| author_facet |
Zhao, Jian-Shen Manno, Dominic Beaulieu, Chantale Paquet, Louise Hawari, Jalal Zhao, Jian-Shen Manno, Dominic Beaulieu, Chantale Paquet, Louise Hawari, Jalal |
|---|---|
| author |
Zhao, Jian-Shen Manno, Dominic Beaulieu, Chantale Paquet, Louise Hawari, Jalal |
| spellingShingle |
Zhao, Jian-Shen Manno, Dominic Beaulieu, Chantale Paquet, Louise Hawari, Jalal International Journal of Systematic and Evolutionary Microbiology Shewanella sediminis sp. nov., a novel Na+-requiring and hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading bacterium from marine sediment General Medicine Ecology, Evolution, Behavior and Systematics Microbiology |
| author_sort |
zhao, jian-shen |
| spelling |
Zhao, Jian-Shen Manno, Dominic Beaulieu, Chantale Paquet, Louise Hawari, Jalal 1466-5026 1466-5034 Microbiology Society General Medicine Ecology, Evolution, Behavior and Systematics Microbiology http://dx.doi.org/10.1099/ijs.0.63604-0 <jats:p>Previously, a psychrophilic rod-shaped marine bacterium (strain HAW-EB3<jats:sup>T</jats:sup>) isolated from Halifax Harbour sediment was noted for its ability to degrade hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX). In the present study phenotypic, chemotaxonomic and genotypic characterization showed that strain HAW-EB3<jats:sup>T</jats:sup> represents a novel species of <jats:italic>Shewanella</jats:italic>. Strain HAW-EB3<jats:sup>T</jats:sup> contained lysine decarboxylase, which is absent in other known <jats:italic>Shewanella</jats:italic> species, and distinguished itself from most other species of <jats:italic>Shewanella</jats:italic> by the presence of arginine dehydrolase, ornithine decarboxylase and chitinase, and by its ability to oxidize and ferment <jats:italic>N</jats:italic>-acetyl-<jats:sc>d</jats:sc>-glucosamine. Strain HAW-EB3<jats:sup>T</jats:sup> grew on several carbon sources (<jats:italic>N</jats:italic>-acetyl-<jats:sc>d</jats:sc>-glucosamine, Tween 40, Tween 80, acetate, succinate, butyrate and serine) and showed distinctive fatty acid and quinone compositions. Both phenotypic and 16S rRNA gene phylogenetic cluster analyses demonstrated that HAW-EB3<jats:sup>T</jats:sup> belongs to the Na<jats:sup>+</jats:sup>-requiring group of <jats:italic>Shewanella</jats:italic> species. The HAW-EB3<jats:sup>T</jats:sup> 16S rRNA gene sequence displayed ⩽97·4 % similarity to all known <jats:italic>Shewanella</jats:italic> species and was most similar to those of two bioluminescent species, <jats:italic>Shewanella hanedai</jats:italic> and <jats:italic>Shewanella woodyi</jats:italic>. However, <jats:italic>gyrB</jats:italic> of strain HAW-EB3<jats:sup>T</jats:sup> was significantly different from those of other <jats:italic>Shewanella</jats:italic> species, with similarities less than 85 %. DNA-DNA hybridization showed that its genomic DNA was less than 25 % related to that of <jats:italic>S. hanedai</jats:italic> or <jats:italic>S. woodyi</jats:italic>. Therefore we propose <jats:italic>Shewanella sediminis</jats:italic> sp. nov., with HAW-EB3<jats:sup>T</jats:sup> (=NCIMB 14036<jats:sup>T</jats:sup>=DSM 17055<jats:sup>T</jats:sup>) as the type strain.</jats:p> Shewanella sediminis sp. nov., a novel Na+-requiring and hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading bacterium from marine sediment International Journal of Systematic and Evolutionary Microbiology |
| doi_str_mv |
10.1099/ijs.0.63604-0 |
| facet_avail |
Online Free |
| finc_class_facet |
Geographie Biologie |
| format |
ElectronicArticle |
| fullrecord |
blob:ai-49-aHR0cDovL2R4LmRvaS5vcmcvMTAuMTA5OS9panMuMC42MzYwNC0w |
| id |
ai-49-aHR0cDovL2R4LmRvaS5vcmcvMTAuMTA5OS9panMuMC42MzYwNC0w |
| institution |
DE-Bn3 DE-Brt1 DE-Zwi2 DE-D161 DE-Gla1 DE-Zi4 DE-15 DE-Pl11 DE-Rs1 DE-105 DE-14 DE-Ch1 DE-L229 DE-D275 |
| imprint |
Microbiology Society, 2005 |
| imprint_str_mv |
Microbiology Society, 2005 |
| issn |
1466-5026 1466-5034 |
| issn_str_mv |
1466-5026 1466-5034 |
| language |
English |
| mega_collection |
Microbiology Society (CrossRef) |
| match_str |
zhao2005shewanellasediminisspnovanovelnarequiringandhexahydro135trinitro135triazinedegradingbacteriumfrommarinesediment |
| publishDateSort |
2005 |
| publisher |
Microbiology Society |
| recordtype |
ai |
| record_format |
ai |
| series |
International Journal of Systematic and Evolutionary Microbiology |
| source_id |
49 |
| title |
Shewanella sediminis sp. nov., a novel Na+-requiring and hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading bacterium from marine sediment |
| title_unstemmed |
Shewanella sediminis sp. nov., a novel Na+-requiring and hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading bacterium from marine sediment |
| title_full |
Shewanella sediminis sp. nov., a novel Na+-requiring and hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading bacterium from marine sediment |
| title_fullStr |
Shewanella sediminis sp. nov., a novel Na+-requiring and hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading bacterium from marine sediment |
| title_full_unstemmed |
Shewanella sediminis sp. nov., a novel Na+-requiring and hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading bacterium from marine sediment |
| title_short |
Shewanella sediminis sp. nov., a novel Na+-requiring and hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading bacterium from marine sediment |
| title_sort |
shewanella sediminis sp. nov., a novel na+-requiring and hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading bacterium from marine sediment |
| topic |
General Medicine Ecology, Evolution, Behavior and Systematics Microbiology |
| url |
http://dx.doi.org/10.1099/ijs.0.63604-0 |
| publishDate |
2005 |
| physical |
1511-1520 |
| description |
<jats:p>Previously, a psychrophilic rod-shaped marine bacterium (strain HAW-EB3<jats:sup>T</jats:sup>) isolated from Halifax Harbour sediment was noted for its ability to degrade hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX). In the present study phenotypic, chemotaxonomic and genotypic characterization showed that strain HAW-EB3<jats:sup>T</jats:sup> represents a novel species of <jats:italic>Shewanella</jats:italic>. Strain HAW-EB3<jats:sup>T</jats:sup> contained lysine decarboxylase, which is absent in other known <jats:italic>Shewanella</jats:italic> species, and distinguished itself from most other species of <jats:italic>Shewanella</jats:italic> by the presence of arginine dehydrolase, ornithine decarboxylase and chitinase, and by its ability to oxidize and ferment <jats:italic>N</jats:italic>-acetyl-<jats:sc>d</jats:sc>-glucosamine. Strain HAW-EB3<jats:sup>T</jats:sup> grew on several carbon sources (<jats:italic>N</jats:italic>-acetyl-<jats:sc>d</jats:sc>-glucosamine, Tween 40, Tween 80, acetate, succinate, butyrate and serine) and showed distinctive fatty acid and quinone compositions. Both phenotypic and 16S rRNA gene phylogenetic cluster analyses demonstrated that HAW-EB3<jats:sup>T</jats:sup> belongs to the Na<jats:sup>+</jats:sup>-requiring group of <jats:italic>Shewanella</jats:italic> species. The HAW-EB3<jats:sup>T</jats:sup> 16S rRNA gene sequence displayed ⩽97·4 % similarity to all known <jats:italic>Shewanella</jats:italic> species and was most similar to those of two bioluminescent species, <jats:italic>Shewanella hanedai</jats:italic> and <jats:italic>Shewanella woodyi</jats:italic>. However, <jats:italic>gyrB</jats:italic> of strain HAW-EB3<jats:sup>T</jats:sup> was significantly different from those of other <jats:italic>Shewanella</jats:italic> species, with similarities less than 85 %. DNA-DNA hybridization showed that its genomic DNA was less than 25 % related to that of <jats:italic>S. hanedai</jats:italic> or <jats:italic>S. woodyi</jats:italic>. Therefore we propose <jats:italic>Shewanella sediminis</jats:italic> sp. nov., with HAW-EB3<jats:sup>T</jats:sup> (=NCIMB 14036<jats:sup>T</jats:sup>=DSM 17055<jats:sup>T</jats:sup>) as the type strain.</jats:p> |
| container_issue |
4 |
| container_start_page |
1511 |
| container_title |
International Journal of Systematic and Evolutionary Microbiology |
| container_volume |
55 |
| format_de105 |
Article, E-Article |
| format_de14 |
Article, E-Article |
| format_de15 |
Article, E-Article |
| format_de520 |
Article, E-Article |
| format_de540 |
Article, E-Article |
| format_dech1 |
Article, E-Article |
| format_ded117 |
Article, E-Article |
| format_degla1 |
E-Article |
| format_del152 |
Buch |
| format_del189 |
Article, E-Article |
| format_dezi4 |
Article |
| format_dezwi2 |
Article, E-Article |
| format_finc |
Article, E-Article |
| format_nrw |
Article, E-Article |
| _version_ |
1792346165153366016 |
| geogr_code |
not assigned |
| last_indexed |
2024-03-01T17:35:01.513Z |
| geogr_code_person |
not assigned |
| openURL |
url_ver=Z39.88-2004&ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fvufind.svn.sourceforge.net%3Agenerator&rft.title=Shewanella+sediminis+sp.+nov.%2C+a+novel+Na%2B-requiring+and+hexahydro-1%2C3%2C5-trinitro-1%2C3%2C5-triazine-degrading+bacterium+from+marine+sediment&rft.date=2005-07-01&genre=article&issn=1466-5034&volume=55&issue=4&spage=1511&epage=1520&pages=1511-1520&jtitle=International+Journal+of+Systematic+and+Evolutionary+Microbiology&atitle=Shewanella+sediminis+sp.+nov.%2C+a+novel+Na%2B-requiring+and+hexahydro-1%2C3%2C5-trinitro-1%2C3%2C5-triazine-degrading+bacterium+from+marine+sediment&aulast=Hawari&aufirst=Jalal&rft_id=info%3Adoi%2F10.1099%2Fijs.0.63604-0&rft.language%5B0%5D=eng |
| SOLR | |
| _version_ | 1792346165153366016 |
| author | Zhao, Jian-Shen, Manno, Dominic, Beaulieu, Chantale, Paquet, Louise, Hawari, Jalal |
| author_facet | Zhao, Jian-Shen, Manno, Dominic, Beaulieu, Chantale, Paquet, Louise, Hawari, Jalal, Zhao, Jian-Shen, Manno, Dominic, Beaulieu, Chantale, Paquet, Louise, Hawari, Jalal |
| author_sort | zhao, jian-shen |
| container_issue | 4 |
| container_start_page | 1511 |
| container_title | International Journal of Systematic and Evolutionary Microbiology |
| container_volume | 55 |
| description | <jats:p>Previously, a psychrophilic rod-shaped marine bacterium (strain HAW-EB3<jats:sup>T</jats:sup>) isolated from Halifax Harbour sediment was noted for its ability to degrade hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX). In the present study phenotypic, chemotaxonomic and genotypic characterization showed that strain HAW-EB3<jats:sup>T</jats:sup> represents a novel species of <jats:italic>Shewanella</jats:italic>. Strain HAW-EB3<jats:sup>T</jats:sup> contained lysine decarboxylase, which is absent in other known <jats:italic>Shewanella</jats:italic> species, and distinguished itself from most other species of <jats:italic>Shewanella</jats:italic> by the presence of arginine dehydrolase, ornithine decarboxylase and chitinase, and by its ability to oxidize and ferment <jats:italic>N</jats:italic>-acetyl-<jats:sc>d</jats:sc>-glucosamine. Strain HAW-EB3<jats:sup>T</jats:sup> grew on several carbon sources (<jats:italic>N</jats:italic>-acetyl-<jats:sc>d</jats:sc>-glucosamine, Tween 40, Tween 80, acetate, succinate, butyrate and serine) and showed distinctive fatty acid and quinone compositions. Both phenotypic and 16S rRNA gene phylogenetic cluster analyses demonstrated that HAW-EB3<jats:sup>T</jats:sup> belongs to the Na<jats:sup>+</jats:sup>-requiring group of <jats:italic>Shewanella</jats:italic> species. The HAW-EB3<jats:sup>T</jats:sup> 16S rRNA gene sequence displayed ⩽97·4 % similarity to all known <jats:italic>Shewanella</jats:italic> species and was most similar to those of two bioluminescent species, <jats:italic>Shewanella hanedai</jats:italic> and <jats:italic>Shewanella woodyi</jats:italic>. However, <jats:italic>gyrB</jats:italic> of strain HAW-EB3<jats:sup>T</jats:sup> was significantly different from those of other <jats:italic>Shewanella</jats:italic> species, with similarities less than 85 %. DNA-DNA hybridization showed that its genomic DNA was less than 25 % related to that of <jats:italic>S. hanedai</jats:italic> or <jats:italic>S. woodyi</jats:italic>. Therefore we propose <jats:italic>Shewanella sediminis</jats:italic> sp. nov., with HAW-EB3<jats:sup>T</jats:sup> (=NCIMB 14036<jats:sup>T</jats:sup>=DSM 17055<jats:sup>T</jats:sup>) as the type strain.</jats:p> |
| doi_str_mv | 10.1099/ijs.0.63604-0 |
| facet_avail | Online, Free |
| finc_class_facet | Geographie, Biologie |
| format | ElectronicArticle |
| format_de105 | Article, E-Article |
| format_de14 | Article, E-Article |
| format_de15 | Article, E-Article |
| format_de520 | Article, E-Article |
| format_de540 | Article, E-Article |
| format_dech1 | Article, E-Article |
| format_ded117 | Article, E-Article |
| format_degla1 | E-Article |
| format_del152 | Buch |
| format_del189 | Article, E-Article |
| format_dezi4 | Article |
| format_dezwi2 | Article, E-Article |
| format_finc | Article, E-Article |
| format_nrw | Article, E-Article |
| geogr_code | not assigned |
| geogr_code_person | not assigned |
| id | ai-49-aHR0cDovL2R4LmRvaS5vcmcvMTAuMTA5OS9panMuMC42MzYwNC0w |
| imprint | Microbiology Society, 2005 |
| imprint_str_mv | Microbiology Society, 2005 |
| institution | DE-Bn3, DE-Brt1, DE-Zwi2, DE-D161, DE-Gla1, DE-Zi4, DE-15, DE-Pl11, DE-Rs1, DE-105, DE-14, DE-Ch1, DE-L229, DE-D275 |
| issn | 1466-5026, 1466-5034 |
| issn_str_mv | 1466-5026, 1466-5034 |
| language | English |
| last_indexed | 2024-03-01T17:35:01.513Z |
| match_str | zhao2005shewanellasediminisspnovanovelnarequiringandhexahydro135trinitro135triazinedegradingbacteriumfrommarinesediment |
| mega_collection | Microbiology Society (CrossRef) |
| physical | 1511-1520 |
| publishDate | 2005 |
| publishDateSort | 2005 |
| publisher | Microbiology Society |
| record_format | ai |
| recordtype | ai |
| series | International Journal of Systematic and Evolutionary Microbiology |
| source_id | 49 |
| spelling | Zhao, Jian-Shen Manno, Dominic Beaulieu, Chantale Paquet, Louise Hawari, Jalal 1466-5026 1466-5034 Microbiology Society General Medicine Ecology, Evolution, Behavior and Systematics Microbiology http://dx.doi.org/10.1099/ijs.0.63604-0 <jats:p>Previously, a psychrophilic rod-shaped marine bacterium (strain HAW-EB3<jats:sup>T</jats:sup>) isolated from Halifax Harbour sediment was noted for its ability to degrade hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX). In the present study phenotypic, chemotaxonomic and genotypic characterization showed that strain HAW-EB3<jats:sup>T</jats:sup> represents a novel species of <jats:italic>Shewanella</jats:italic>. Strain HAW-EB3<jats:sup>T</jats:sup> contained lysine decarboxylase, which is absent in other known <jats:italic>Shewanella</jats:italic> species, and distinguished itself from most other species of <jats:italic>Shewanella</jats:italic> by the presence of arginine dehydrolase, ornithine decarboxylase and chitinase, and by its ability to oxidize and ferment <jats:italic>N</jats:italic>-acetyl-<jats:sc>d</jats:sc>-glucosamine. Strain HAW-EB3<jats:sup>T</jats:sup> grew on several carbon sources (<jats:italic>N</jats:italic>-acetyl-<jats:sc>d</jats:sc>-glucosamine, Tween 40, Tween 80, acetate, succinate, butyrate and serine) and showed distinctive fatty acid and quinone compositions. Both phenotypic and 16S rRNA gene phylogenetic cluster analyses demonstrated that HAW-EB3<jats:sup>T</jats:sup> belongs to the Na<jats:sup>+</jats:sup>-requiring group of <jats:italic>Shewanella</jats:italic> species. The HAW-EB3<jats:sup>T</jats:sup> 16S rRNA gene sequence displayed ⩽97·4 % similarity to all known <jats:italic>Shewanella</jats:italic> species and was most similar to those of two bioluminescent species, <jats:italic>Shewanella hanedai</jats:italic> and <jats:italic>Shewanella woodyi</jats:italic>. However, <jats:italic>gyrB</jats:italic> of strain HAW-EB3<jats:sup>T</jats:sup> was significantly different from those of other <jats:italic>Shewanella</jats:italic> species, with similarities less than 85 %. DNA-DNA hybridization showed that its genomic DNA was less than 25 % related to that of <jats:italic>S. hanedai</jats:italic> or <jats:italic>S. woodyi</jats:italic>. Therefore we propose <jats:italic>Shewanella sediminis</jats:italic> sp. nov., with HAW-EB3<jats:sup>T</jats:sup> (=NCIMB 14036<jats:sup>T</jats:sup>=DSM 17055<jats:sup>T</jats:sup>) as the type strain.</jats:p> Shewanella sediminis sp. nov., a novel Na+-requiring and hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading bacterium from marine sediment International Journal of Systematic and Evolutionary Microbiology |
| spellingShingle | Zhao, Jian-Shen, Manno, Dominic, Beaulieu, Chantale, Paquet, Louise, Hawari, Jalal, International Journal of Systematic and Evolutionary Microbiology, Shewanella sediminis sp. nov., a novel Na+-requiring and hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading bacterium from marine sediment, General Medicine, Ecology, Evolution, Behavior and Systematics, Microbiology |
| title | Shewanella sediminis sp. nov., a novel Na+-requiring and hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading bacterium from marine sediment |
| title_full | Shewanella sediminis sp. nov., a novel Na+-requiring and hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading bacterium from marine sediment |
| title_fullStr | Shewanella sediminis sp. nov., a novel Na+-requiring and hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading bacterium from marine sediment |
| title_full_unstemmed | Shewanella sediminis sp. nov., a novel Na+-requiring and hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading bacterium from marine sediment |
| title_short | Shewanella sediminis sp. nov., a novel Na+-requiring and hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading bacterium from marine sediment |
| title_sort | shewanella sediminis sp. nov., a novel na+-requiring and hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading bacterium from marine sediment |
| title_unstemmed | Shewanella sediminis sp. nov., a novel Na+-requiring and hexahydro-1,3,5-trinitro-1,3,5-triazine-degrading bacterium from marine sediment |
| topic | General Medicine, Ecology, Evolution, Behavior and Systematics, Microbiology |
| url | http://dx.doi.org/10.1099/ijs.0.63604-0 |