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The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models
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| Zeitschriftentitel: | Bioinformatics |
|---|---|
| Personen und Körperschaften: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
| In: | Bioinformatics, 19, 2003, 4, S. 524-531 |
| Format: | E-Article |
| Sprache: | Englisch |
| veröffentlicht: |
Oxford University Press (OUP)
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| Schlagwörter: |
| author_facet |
Hucka, M. Finney, A. Sauro, H. M. Bolouri, H. Doyle, J. C. Kitano, H. Arkin, A. P. Bornstein, B. J. Bray, D. Cornish-Bowden, A. Cuellar, A. A. Dronov, S. Gilles, E. D. Ginkel, M. Gor, V. Goryanin, I. I. Hedley, W. J. Hodgman, T. C. Hofmeyr, J.-H. Hunter, P. J. Juty, N. S. Kasberger, J. L. Kremling, A. Kummer, U. Le Novère, N. Loew, L. M. Lucio, D. Mendes, P. Minch, E. Mjolsness, E. D. Nakayama, Y. Nelson, M. R. Nielsen, P. F. Sakurada, T. Schaff, J. C. Shapiro, B. E. Shimizu, T. S. Spence, H. D. Stelling, J. Takahashi, K. Tomita, M. Wagner, J. Wang, J. Hucka, M. Finney, A. Sauro, H. M. Bolouri, H. Doyle, J. C. Kitano, H. Arkin, A. P. Bornstein, B. J. Bray, D. Cornish-Bowden, A. Cuellar, A. A. Dronov, S. Gilles, E. D. Ginkel, M. Gor, V. Goryanin, I. I. Hedley, W. J. Hodgman, T. C. Hofmeyr, J.-H. Hunter, P. J. Juty, N. S. Kasberger, J. L. Kremling, A. Kummer, U. Le Novère, N. Loew, L. M. Lucio, D. Mendes, P. Minch, E. Mjolsness, E. D. Nakayama, Y. Nelson, M. R. Nielsen, P. F. Sakurada, T. Schaff, J. C. Shapiro, B. E. Shimizu, T. S. Spence, H. D. Stelling, J. Takahashi, K. Tomita, M. Wagner, J. Wang, J. |
|---|---|
| author |
Hucka, M. Finney, A. Sauro, H. M. Bolouri, H. Doyle, J. C. Kitano, H. Arkin, A. P. Bornstein, B. J. Bray, D. Cornish-Bowden, A. Cuellar, A. A. Dronov, S. Gilles, E. D. Ginkel, M. Gor, V. Goryanin, I. I. Hedley, W. J. Hodgman, T. C. Hofmeyr, J.-H. Hunter, P. J. Juty, N. S. Kasberger, J. L. Kremling, A. Kummer, U. Le Novère, N. Loew, L. M. Lucio, D. Mendes, P. Minch, E. Mjolsness, E. D. Nakayama, Y. Nelson, M. R. Nielsen, P. F. Sakurada, T. Schaff, J. C. Shapiro, B. E. Shimizu, T. S. Spence, H. D. Stelling, J. Takahashi, K. Tomita, M. Wagner, J. Wang, J. |
| spellingShingle |
Hucka, M. Finney, A. Sauro, H. M. Bolouri, H. Doyle, J. C. Kitano, H. Arkin, A. P. Bornstein, B. J. Bray, D. Cornish-Bowden, A. Cuellar, A. A. Dronov, S. Gilles, E. D. Ginkel, M. Gor, V. Goryanin, I. I. Hedley, W. J. Hodgman, T. C. Hofmeyr, J.-H. Hunter, P. J. Juty, N. S. Kasberger, J. L. Kremling, A. Kummer, U. Le Novère, N. Loew, L. M. Lucio, D. Mendes, P. Minch, E. Mjolsness, E. D. Nakayama, Y. Nelson, M. R. Nielsen, P. F. Sakurada, T. Schaff, J. C. Shapiro, B. E. Shimizu, T. S. Spence, H. D. Stelling, J. Takahashi, K. Tomita, M. Wagner, J. Wang, J. Bioinformatics The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models Computational Mathematics Computational Theory and Mathematics Computer Science Applications Molecular Biology Biochemistry Statistics and Probability |
| author_sort |
hucka, m. |
| spelling |
Hucka, M. Finney, A. Sauro, H. M. Bolouri, H. Doyle, J. C. Kitano, H. Arkin, A. P. Bornstein, B. J. Bray, D. Cornish-Bowden, A. Cuellar, A. A. Dronov, S. Gilles, E. D. Ginkel, M. Gor, V. Goryanin, I. I. Hedley, W. J. Hodgman, T. C. Hofmeyr, J.-H. Hunter, P. J. Juty, N. S. Kasberger, J. L. Kremling, A. Kummer, U. Le Novère, N. Loew, L. M. Lucio, D. Mendes, P. Minch, E. Mjolsness, E. D. Nakayama, Y. Nelson, M. R. Nielsen, P. F. Sakurada, T. Schaff, J. C. Shapiro, B. E. Shimizu, T. S. Spence, H. D. Stelling, J. Takahashi, K. Tomita, M. Wagner, J. Wang, J. 1367-4811 1367-4803 Oxford University Press (OUP) Computational Mathematics Computational Theory and Mathematics Computer Science Applications Molecular Biology Biochemistry Statistics and Probability http://dx.doi.org/10.1093/bioinformatics/btg015 <jats:title>Abstract</jats:title> <jats:p>Motivation: Molecular biotechnology now makes it possible to build elaborate systems models, but the systems biology community needs information standards if models are to be shared, evaluated and developed cooperatively.</jats:p> <jats:p>Results: We summarize the Systems Biology Markup Language (SBML) Level 1, a free, open, XML-based format for representing biochemical reaction networks. SBML is a software-independent language for describing models common to research in many areas of computational biology, including cell signaling pathways, metabolic pathways, gene regulation, and others.</jats:p> <jats:p>Availability: The specification of SBML Level 1 is freely available from http://www.sbml.org/</jats:p> <jats:p>Contact: sysbio-team@caltech.edu</jats:p> <jats:p>* To whom correspondence should be addressed.</jats:p> The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models Bioinformatics |
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| title |
The systems biology markup language (SBML): a medium for
representation and exchange of biochemical network models |
| title_unstemmed |
The systems biology markup language (SBML): a medium for
representation and exchange of biochemical network models |
| title_full |
The systems biology markup language (SBML): a medium for
representation and exchange of biochemical network models |
| title_fullStr |
The systems biology markup language (SBML): a medium for
representation and exchange of biochemical network models |
| title_full_unstemmed |
The systems biology markup language (SBML): a medium for
representation and exchange of biochemical network models |
| title_short |
The systems biology markup language (SBML): a medium for
representation and exchange of biochemical network models |
| title_sort |
the systems biology markup language (sbml): a medium for
representation and exchange of biochemical network models |
| topic |
Computational Mathematics Computational Theory and Mathematics Computer Science Applications Molecular Biology Biochemistry Statistics and Probability |
| url |
http://dx.doi.org/10.1093/bioinformatics/btg015 |
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2003 |
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524-531 |
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<jats:title>Abstract</jats:title>
<jats:p>Motivation: Molecular biotechnology now makes it possible to build elaborate systems models, but the systems biology community needs information standards if models are to be shared, evaluated and developed cooperatively.</jats:p>
<jats:p>Results: We summarize the Systems Biology Markup Language (SBML) Level 1, a free, open, XML-based format for representing biochemical reaction networks. SBML is a software-independent language for describing models common to research in many areas of computational biology, including cell signaling pathways, metabolic pathways, gene regulation, and others.</jats:p>
<jats:p>Availability: The specification of SBML Level 1 is freely available from http://www.sbml.org/</jats:p>
<jats:p>Contact: sysbio-team@caltech.edu</jats:p>
<jats:p>* To whom correspondence should be addressed.</jats:p> |
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| author | Hucka, M., Finney, A., Sauro, H. M., Bolouri, H., Doyle, J. C., Kitano, H., Arkin, A. P., Bornstein, B. J., Bray, D., Cornish-Bowden, A., Cuellar, A. A., Dronov, S., Gilles, E. D., Ginkel, M., Gor, V., Goryanin, I. I., Hedley, W. J., Hodgman, T. C., Hofmeyr, J.-H., Hunter, P. J., Juty, N. S., Kasberger, J. L., Kremling, A., Kummer, U., Le Novère, N., Loew, L. M., Lucio, D., Mendes, P., Minch, E., Mjolsness, E. D., Nakayama, Y., Nelson, M. R., Nielsen, P. F., Sakurada, T., Schaff, J. C., Shapiro, B. E., Shimizu, T. S., Spence, H. D., Stelling, J., Takahashi, K., Tomita, M., Wagner, J., Wang, J. |
| author_facet | Hucka, M., Finney, A., Sauro, H. M., Bolouri, H., Doyle, J. C., Kitano, H., Arkin, A. P., Bornstein, B. J., Bray, D., Cornish-Bowden, A., Cuellar, A. A., Dronov, S., Gilles, E. D., Ginkel, M., Gor, V., Goryanin, I. I., Hedley, W. J., Hodgman, T. C., Hofmeyr, J.-H., Hunter, P. J., Juty, N. S., Kasberger, J. L., Kremling, A., Kummer, U., Le Novère, N., Loew, L. M., Lucio, D., Mendes, P., Minch, E., Mjolsness, E. D., Nakayama, Y., Nelson, M. R., Nielsen, P. F., Sakurada, T., Schaff, J. C., Shapiro, B. E., Shimizu, T. S., Spence, H. D., Stelling, J., Takahashi, K., Tomita, M., Wagner, J., Wang, J., Hucka, M., Finney, A., Sauro, H. M., Bolouri, H., Doyle, J. C., Kitano, H., Arkin, A. P., Bornstein, B. J., Bray, D., Cornish-Bowden, A., Cuellar, A. A., Dronov, S., Gilles, E. D., Ginkel, M., Gor, V., Goryanin, I. I., Hedley, W. J., Hodgman, T. C., Hofmeyr, J.-H., Hunter, P. J., Juty, N. S., Kasberger, J. L., Kremling, A., Kummer, U., Le Novère, N., Loew, L. M., Lucio, D., Mendes, P., Minch, E., Mjolsness, E. D., Nakayama, Y., Nelson, M. R., Nielsen, P. F., Sakurada, T., Schaff, J. C., Shapiro, B. E., Shimizu, T. S., Spence, H. D., Stelling, J., Takahashi, K., Tomita, M., Wagner, J., Wang, J. |
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| description | <jats:title>Abstract</jats:title> <jats:p>Motivation: Molecular biotechnology now makes it possible to build elaborate systems models, but the systems biology community needs information standards if models are to be shared, evaluated and developed cooperatively.</jats:p> <jats:p>Results: We summarize the Systems Biology Markup Language (SBML) Level 1, a free, open, XML-based format for representing biochemical reaction networks. SBML is a software-independent language for describing models common to research in many areas of computational biology, including cell signaling pathways, metabolic pathways, gene regulation, and others.</jats:p> <jats:p>Availability: The specification of SBML Level 1 is freely available from http://www.sbml.org/</jats:p> <jats:p>Contact: sysbio-team@caltech.edu</jats:p> <jats:p>* To whom correspondence should be addressed.</jats:p> |
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| spelling | Hucka, M. Finney, A. Sauro, H. M. Bolouri, H. Doyle, J. C. Kitano, H. Arkin, A. P. Bornstein, B. J. Bray, D. Cornish-Bowden, A. Cuellar, A. A. Dronov, S. Gilles, E. D. Ginkel, M. Gor, V. Goryanin, I. I. Hedley, W. J. Hodgman, T. C. Hofmeyr, J.-H. Hunter, P. J. Juty, N. S. Kasberger, J. L. Kremling, A. Kummer, U. Le Novère, N. Loew, L. M. Lucio, D. Mendes, P. Minch, E. Mjolsness, E. D. Nakayama, Y. Nelson, M. R. Nielsen, P. F. Sakurada, T. Schaff, J. C. Shapiro, B. E. Shimizu, T. S. Spence, H. D. Stelling, J. Takahashi, K. Tomita, M. Wagner, J. Wang, J. 1367-4811 1367-4803 Oxford University Press (OUP) Computational Mathematics Computational Theory and Mathematics Computer Science Applications Molecular Biology Biochemistry Statistics and Probability http://dx.doi.org/10.1093/bioinformatics/btg015 <jats:title>Abstract</jats:title> <jats:p>Motivation: Molecular biotechnology now makes it possible to build elaborate systems models, but the systems biology community needs information standards if models are to be shared, evaluated and developed cooperatively.</jats:p> <jats:p>Results: We summarize the Systems Biology Markup Language (SBML) Level 1, a free, open, XML-based format for representing biochemical reaction networks. SBML is a software-independent language for describing models common to research in many areas of computational biology, including cell signaling pathways, metabolic pathways, gene regulation, and others.</jats:p> <jats:p>Availability: The specification of SBML Level 1 is freely available from http://www.sbml.org/</jats:p> <jats:p>Contact: sysbio-team@caltech.edu</jats:p> <jats:p>* To whom correspondence should be addressed.</jats:p> The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models Bioinformatics |
| spellingShingle | Hucka, M., Finney, A., Sauro, H. M., Bolouri, H., Doyle, J. C., Kitano, H., Arkin, A. P., Bornstein, B. J., Bray, D., Cornish-Bowden, A., Cuellar, A. A., Dronov, S., Gilles, E. D., Ginkel, M., Gor, V., Goryanin, I. I., Hedley, W. J., Hodgman, T. C., Hofmeyr, J.-H., Hunter, P. J., Juty, N. S., Kasberger, J. L., Kremling, A., Kummer, U., Le Novère, N., Loew, L. M., Lucio, D., Mendes, P., Minch, E., Mjolsness, E. D., Nakayama, Y., Nelson, M. R., Nielsen, P. F., Sakurada, T., Schaff, J. C., Shapiro, B. E., Shimizu, T. S., Spence, H. D., Stelling, J., Takahashi, K., Tomita, M., Wagner, J., Wang, J., Bioinformatics, The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models, Computational Mathematics, Computational Theory and Mathematics, Computer Science Applications, Molecular Biology, Biochemistry, Statistics and Probability |
| title | The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models |
| title_full | The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models |
| title_fullStr | The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models |
| title_full_unstemmed | The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models |
| title_short | The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models |
| title_sort | the systems biology markup language (sbml): a medium for representation and exchange of biochemical network models |
| title_unstemmed | The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models |
| topic | Computational Mathematics, Computational Theory and Mathematics, Computer Science Applications, Molecular Biology, Biochemistry, Statistics and Probability |
| url | http://dx.doi.org/10.1093/bioinformatics/btg015 |